Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02424 ATGTCCATCAAATGGGCCATTGACCTTGACACACCAGATATCATCCACAATCATGCCCAACCCATTACTCTGCCCCAATTGGTCTCTGCTCTTCAAATTCCACAAGCAAAAGTTGCTTGTGTTCAACACCTTATGCGTTTATTGGCACACAATAACTTGTTTACAATTATCAAAATGGAAGACCTAAAAGAAGCATATGCTCTTACTCCAACTTCAGAGCTCCTTGTCAAAGGCACTGACCATTGTTTATCTTCAATGGTTAAATTGCTAACCAACCCAACTCTTGTTGGCTTATATAATCATTTGGGTAAATGGACTACTGGAGAGGAGAGCACAATCTATGAGACCACATTAGGCCCAGGAGACTATTGGGATTTTATTCATCAAGATCCCACACACTTGAACTCCTTCAATAAGGCCATGGAAAGTGATTCTCATGTGGTAAGGTTGGCATTGAGTGAATGCAAATCAATTTTTGAGGGATTGAGTTCTCTTGTTGACGTTGGAGGTGGAACTGGAAACACTGCTAAAATTATTTGTGAGGCATTTCCTAAGTTAAAGTGCACAGTGTTGGACCTTCCACAAGTTGTTAATGGTTTAACCGGAAGCAACAATTTCAGTTATGTTGGCGGAAACATGTTTAAATCTATCCCTCATGCTGATGCAGTTTTACTTAAGTGGATTTTACATGATTGGAACGATGATGATTGTGTAAAGATTCTTAAAAATTGTAGAGAAGTTGTTTCAAGAAATGGAAAAGGAGGAAAAGTGATCATAATAGACATTGTGATAAATGAAGAGCAAGATGAGCATGAAATGACTGAAGTCAAGCTATTCTTTGACATAATTATGATGGCCAGTTCAATGCAAAAGAGAGAGACGAAAAAAATTGGAAGCATATCTTTGCAGAAGCAGGCTTCACACATTATAAAATATTTCCTATATTTGGTTTTAGATCACTTATTGAGCTTTATCCTTGAGTTACTTTACTTATTATTAGATTTTTTTACATTTGATTGTACTAAAATAAAGTGTTAA 1038 0.3651 MSIKWAIDLDTPDIIHNHAQPITLPQLVSALQIPQAKVACVQHLMRLLAHNNLFTIIKMEDLKEAYALTPTSELLVKGTDHCLSSMVKLLTNPTLVGLYNHLGKWTTGEESTIYETTLGPGDYWDFIHQDPTHLNSFNKAMESDSHVVRLALSECKSIFEGLSSLVDVGGGTGNTAKIICEAFPKLKCTVLDLPQVVNGLTGSNNFSYVGGNMFKSIPHADAVLLKWILHDWNDDDCVKILKNCREVVSRNGKGGKVIIIDIVINEEQDEHEMTEVKLFFDIIMMASSMQKRETKKIGSISLQKQASHIIKYFLYLVLDHLLSFILELLYLLLDFFTFDCTKIKC. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02424 345 PIRSF O-mtase 1 307 IPR016461 GO:0008168
Seca11g02424 345 Gene3D - 1 75 IPR036388 -
Seca11g02424 345 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 326 IPR016461 GO:0008168
Seca11g02424 345 Pfam O-methyltransferase domain 99 296 IPR001077 GO:0008171
Seca11g02424 345 FunFam O-methyltransferase ZRP4 77 309 - -
Seca11g02424 345 Gene3D Vaccinia Virus protein VP39 76 307 IPR029063 -
Seca11g02424 345 Pfam Dimerisation domain 1 49 IPR012967 GO:0046983
Seca11g02424 345 SUPERFAMILY "Winged helix" DNA-binding domain 1 79 IPR036390 -
Seca11g02424 345 PANTHER O-METHYLTRANSFERASE 1 296 IPR016461 GO:0008168
Seca11g02424 345 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 82 287 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02424 Seca-Chr11 38348707 38350029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02424 1 293 Monolignol Biosynthesis Gene Families AT5G54160 31.000 7.59e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02424 K22588 K13262 gmx:100818947 342.043