Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02417 ATGGGTCTGTGCACTTCAAAACCACTCTCTTCTCCCAATTCCGGCACCCACTCACCTTCCATTGACATAGACACAGAAACCACTGCTAATGCTAAGCCTCATTCCAATGGCGACAAAAACCCTACCCTTACACCTACCCACCACACCAACAACGGTAAAAAATCACCCTTTTTCCCCTTTTACAGTCCTAGCCCCGCTCACCATTTGTTCTCCGGCAAGTCTCCGGCACCGGGAACTCCAAGGAGGTTCTTCAAGCCACCGTCGCCGGCGAAGCACATTAGGGCTGTTCTGGCTCGCCGTCACGGCTCCGTGAAGCCAAACGAGGTTCCAATACCTGAAGGGAGCGAAGCTGAGGTGGTTGCTCTTGATAAGAATTTCGGGTTCAACAAGCATTTTGGGAACAAGTACCAGCTTGGGGATGAGGTTGGAAGAGGACACTTTGGTTACACTTGTGCTGCTAAGCTCATCAAGGGTGAACACAAGGGCCAACAGGTCGCTGTTAAGGTCATCCCAAAAGCCAAGATGACCACTGCCATCGCAATTGAGGATGTGAGAAGGGAAGTAAAAATATTGAGAGCTTTGACTGGACACAAGAATCTAATACAATTCTATGATGCATATGAAGACCATGATAACGTCTATATAGTAATGGAGTTGTGTGAAGGAGGGGAACTTTTGGACAGAATACTTTCAAGAGGTGGGAAATACACAGAAGAAGATGCAAAAGCTGTCATCACACAAATACTGAATGTTGCTGCATTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTTAAACCTGAGAACTTCTTGTTTACATCCAAAGATGAGAACTCAGAGCTGAAAGCCATAGACTTTGGGTTGTCAGATTTTGTTAGACCAGATGAAAAGCTTAACGATATTGTTGGTAGCGCTTACTATGTGGCTCCTGAAGTTCTGCATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGTATTGGTGTGATTGCATATATTTTATTATGTGGCAGCCGTCCATTTTGGGCACGGACTGAATCTGGGATCTTTCGTGCGGTATTGAAAGCTGATCCAAGTTTCGATGAACCTCCTTGGCCTTCTCTGTCAGATGAGGCAAAGGATTTTGTTAAGCGGCTACTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCACAGGCATTTGGTGAGTTTCTCATCTATCATTGGAAGGTCTTGGTTTTTCTCATATTCTATTCTATTCCTTACAGGTGTATACTGCAGGTCATCCATGGATTAAAAATTATAAGGATGTAA 1290 0.4481 MGLCTSKPLSSPNSGTHSPSIDIDTETTANAKPHSNGDKNPTLTPTHHTNNGKKSPFFPFYSPSPAHHLFSGKSPAPGTPRRFFKPPSPAKHIRAVLARRHGSVKPNEVPIPEGSEAEVVALDKNFGFNKHFGNKYQLGDEVGRGHFGYTCAAKLIKGEHKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLIQFYDAYEDHDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVITQILNVAAFCHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVRPDEKLNDIVGSAYYVAPEVLHRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQAFGEFLIYHWKVLVFLIFYSIPYRCILQVIHGLKIIRM. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02417 429 Pfam Protein kinase domain 136 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02417 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Seca11g02417 429 ProSitePatterns Protein kinases ATP-binding region signature. 142 168 IPR017441 GO:0005524
Seca11g02417 429 MobiDBLite consensus disorder prediction 1 58 - -
Seca11g02417 429 SMART serkin_6 136 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02417 429 Gene3D Phosphorylase Kinase; domain 1 129 225 - -
Seca11g02417 429 FunFam CDPK-related kinase 1 129 224 - -
Seca11g02417 429 FunFam CDPK-related kinase 3 128 300 - -
Seca11g02417 429 FunFam Calcium-dependent protein kinase SK5 308 401 - -
Seca11g02417 429 CDD STKc_CAMK 135 392 - -
Seca11g02417 429 SUPERFAMILY Protein kinase-like (PK-like) 133 402 IPR011009 -
Seca11g02417 429 MobiDBLite consensus disorder prediction 1 57 - -
Seca11g02417 429 Gene3D Transferase(Phosphotransferase) domain 1 226 402 - -
Seca11g02417 429 PANTHER SERINE/THREONINE-PROTEIN KINASE 122 393 - -
Seca11g02417 429 ProSiteProfiles Protein kinase domain profile. 136 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02417 Seca-Chr11 38204081 38207114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02417 1 393 EF-hand Containing Proteins AT3G50530 71.005 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca11g02417 Pkinase 9.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02417 K00924 - gmx:100803313 637.491