Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02364 ATGGTGATAGATACAAAATATCGGGATCGGATGGTTAAGAAGGAGATGGTGGAGCTTCCACAAAATGATCAATTTGTAACGGTAGCATTTCATGGGGAGGATATGCATGAAGACATACCTATAGCCCACCTCTCTAAGAAATCACCTTTAAACATGGCAACATCTGATGAAGCACAGTCACAAAAGTTTGCAAGTTGCAGCTCCATTAAGATTGCAACGGATGGAACATCCTCTCGTGGTGAGGCTATGTCATCTGCTGTGATTCGAGCAGAGGGGATCCAGTCATGTTTGGGACAAGAATTCCCTAGTTTTGTGAAGTCATTGGTCAGATCACATGTTGCTAGTTGTTTTTGGATGGGGTTGCCTGTGGCATTCTGTAAAAGACATTTACCCGATAAGGATGTAACTATCACTTTGGAAGATGAATCTGGAAGAGAATACAAAACAAAATACATTGCATGTAAGACAGGATTGAGTGCTGGTTGGAGACAATTTTCTGCTGTGCATAAATTGCAAGAGGGTGATGTAGTGGTCTTCCAATTAGTTGAACCTACCAAATTTAAGGTTTATATAATAAGAGCTAATAAGTTAAAGGAACTTGATGGGGCGCTTTTGAATCTTGATAGTTGTACAAAACAAAAAGTTGGAGGAAGAAATAACATGGATACTGATGTTATAGCATGTAGTAGCCCAAAGAGAAAACATGGTAAATCTGCCCCACCAGATGTCCAAAAGAAAAAGAAGACCAATGTGTCGAGAATGGGGCCTAAGATGAAGCAGTCTATAGAAGAATCTGAAATTGATAGTGAGGAAGCTCTCTCAGATGTATTGGAGGGCGTTAGAATGCTTGAATTCAAAGATTTAAAAGGTTTTGAAAATTTCAACATCATAGTTGATGGAATGCCAATAGATGCTGAACTTTCTCCTGAAATTCGAAACAAGTACTACAAACTCTGTTATAGTCAGCAAGCCTTCCTTCATGAACATCTCATCAAAGGCATGAACTATAAGTTGATTGTTGGAATTATATCTGAAATTGTCAACATTGCAGATGCCATAAAAGTAAGTGTGATATCTACCCCACGTGTTGAATTTGCTAATTGGGATAAGACTTTGCTTGCCTTTCAACATTTGGGAATGAATGTAGAATTTTTAAGAGTCCGATTGCGCCGCCTTGTAAGCCTTTCCTATGAATCAGATGATGCTTCAGGGACCAAAAGATACTTGATGTATAGAACTGAACACAGTCAAGCAGATGATGAAATAAAGAACGTGGAAAACAAGCTTGAAGAATTGAAGCAAGCTTGTAATGGTTTTGGTGCTTATCTTGAGAGTCTGAAGTGCAAAGCTGGAAGTTATCAGCTCAAGTATCAGAAAGAGCTTGCTGCTCCTTGGTGA 1398 0.3906 MVIDTKYRDRMVKKEMVELPQNDQFVTVAFHGEDMHEDIPIAHLSKKSPLNMATSDEAQSQKFASCSSIKIATDGTSSRGEAMSSAVIRAEGIQSCLGQEFPSFVKSLVRSHVASCFWMGLPVAFCKRHLPDKDVTITLEDESGREYKTKYIACKTGLSAGWRQFSAVHKLQEGDVVVFQLVEPTKFKVYIIRANKLKELDGALLNLDSCTKQKVGGRNNMDTDVIACSSPKRKHGKSAPPDVQKKKKTNVSRMGPKMKQSIEESEIDSEEALSDVLEGVRMLEFKDLKGFENFNIIVDGMPIDAELSPEIRNKYYKLCYSQQAFLHEHLIKGMNYKLIVGIISEIVNIADAIKVSVISTPRVEFANWDKTLLAFQHLGMNVEFLRVRLRRLVSLSYESDDASGTKRYLMYRTEHSQADDEIKNVENKLEELKQACNGFGAYLESLKCKAGSYQLKYQKELAAPW. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02364 465 MobiDBLite consensus disorder prediction 228 249 - -
Seca11g02364 465 ProSiteProfiles B3 DNA-binding domain profile. 104 195 IPR003340 GO:0003677
Seca11g02364 465 SUPERFAMILY DNA-binding pseudobarrel domain 98 195 IPR015300 -
Seca11g02364 465 MobiDBLite consensus disorder prediction 228 263 - -
Seca11g02364 465 Coils Coil 415 435 - -
Seca11g02364 465 CDD B3_DNA 102 193 IPR003340 GO:0003677
Seca11g02364 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 61 198 IPR044837 -
Seca11g02364 465 Gene3D - 81 197 IPR015300 -
Seca11g02364 465 SMART B3_2 104 195 IPR003340 GO:0003677
Seca11g02364 465 Pfam B3 DNA binding domain 104 194 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02364 Seca-Chr11 36923365 36927997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02364 81 195 B3 DNA Binding Superfamily AT3G19184 52.174 2.64e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g02364 B3 8.5e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02364 - - gmx:100819237 658.677