Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02346 ATGGCTGTTCCTGTTTCTAGTGTTAGAGGATCATTACCCGATCAGGAGCAAGAATACTCTATTATAGTCTCAACCCTTATCAATGTTATCTCTTCTGATGCTTCTGCAGTGACCACTACTGCTATACACAGTGATTACACTCGTGTTCCTGTTCCTGTTGTTGATGGTAATTACCACTACAACTTGCATCATGGGGAATCAGCAGCAACCACATCATGGTCCTCTTGTACCAGTGGGACCCTCCTGTCCTACCAGAACCAACCTGATTCTGACACGTGCCGTGTCTGCCAAATCAGCGGCTGCCTCGGTTGCAACTTCTTCTTCCCGCCCGCGGAGCAAAAGGGAACAGAGGGAGAGAACAGGAAGAAGAGGAGGAAGTACAGGGGAGTGAGGCAGAGGGCATGGGGGAAGTGGGTGGCAGAGATTCGAGACCCACATAGAGCCACTCGGGTTTGGCTGGGTACTTTTGAGACTGCAGAGAAAGCTGCAAGGGCTTATGACAGAGCTGCCATTGAGTTTCATGGGGCTCGAGCTAAGATCAATTTTGGGTTATCTGACTATGCAGTTGATGACAAGCAAAGTGCAGTGGTAGGGGTGAACCAAACAAAACCCAACATCGTCTCATCTTCATCTCAAATCAAAACCACTCATTCACAGAACTAG 663 0.4857 MAVPVSSVRGSLPDQEQEYSIIVSTLINVISSDASAVTTTAIHSDYTRVPVPVVDGNYHYNLHHGESAATTSWSSCTSGTLLSYQNQPDSDTCRVCQISGCLGCNFFFPPAEQKGTEGENRKKRRKYRGVRQRAWGKWVAEIRDPHRATRVWLGTFETAEKAARAYDRAAIEFHGARAKINFGLSDYAVDDKQSAVVGVNQTKPNIVSSSSQIKTTHSQN. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02346 220 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Seca11g02346 220 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Seca11g02346 220 FunFam Ethylene-responsive transcription factor 2 125 184 - -
Seca11g02346 220 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Seca11g02346 220 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Seca11g02346 220 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Seca11g02346 220 CDD AP2 126 182 IPR001471 GO:0003700|GO:0006355
Seca11g02346 220 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Seca11g02346 220 PANTHER DNA-BINDING DOMAIN 90 195 IPR044808 GO:0003700|GO:0009873
Seca11g02346 220 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02346 Seca-Chr11 36469150 36469812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02346 16 187 AP2-EREBP Transcription Factor Family AT4G34410 42.574 1.94e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g02346 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02346 - - lja:Lj0g3v0306799.1 202.216