LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g02343	ATGTCGCAACGGTCGACGCCGGCGCCGTTTTTGACGAAGACGTATCAATTGGTGGAGGATCCTGCCACCAACGACGTGATTTCGTGGAGTGAAAGTGGCAACACTTTTGTGGTGTGGAAACATGCTGATTTCGCTAAGGATTTGCTTCCTAAGTACTTTAAGCATAACAACTTCTCAAGCTTTGTTCGCCAGCTCAACACCTATGTAGGATTCCGAAAGATCGTTCCTGACAAATGGGAATTCGCGAACGAGTTTTTCAAGCGAGGACAGAAGGAGCTGCTAGTGGAAATCAAGCGACGGAAGACGGTGCCCCAATCAACGGCAGCCGGAAAATCCAGCGGCGGCGGAGGAGGAGGAAACTCGGCGTCAAACTCCGGCGGCGAGGACATGGGTTCAACGTCGACGGGATCAGTGGAAGCAACACCACAATGCGCAGATTTATCGGGCGAGAACGAGAAATTGAAGAAGGACAACGAGAAATTGAGCTATGAGCTGGCGAGAGCGAAGAAGCAATGCGACGAGCTCGTGGCTTTTCTGAGGGACACACTCAATGTGGGCCCCGATCAGATCAACCGCATCATTCGGCAAGGAACTTGTGGGTCCAGCCCCGATGCGGTGCGTTTTGAAGATAATGACGAAAACGGGGTAGGTGAATGTGAATGTGAAGGCAGGGAAAGTTTGAAACTGTTTGGGGTTTGGTTGAAGAGTGAAGAAGAAGGCAAAGACAAAATGAAAATTGCCACACCTAAGGGTAACTGCCGCAAGAGAGGGCGTGAAGACCCTATTGCTGGTGCCGGTGCCAGTGCCAGTGCCAAGGAGCTCAATACTGTTGTTTAG	837	0.5114	MSQRSTPAPFLTKTYQLVEDPATNDVISWSESGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYVGFRKIVPDKWEFANEFFKRGQKELLVEIKRRKTVPQSTAAGKSSGGGGGGNSASNSGGEDMGSTSTGSVEATPQCADLSGENEKLKKDNEKLSYELARAKKQCDELVAFLRDTLNVGPDQINRIIRQGTCGSSPDAVRFEDNDENGVGECECEGRESLKLFGVWLKSEEEGKDKMKIATPKGNCRKRGREDPIAGAGASASAKELNTVV.	279

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g02343	278	Coils	Coil	144	171	-	-
	Seca11g02343	278	PRINTS	Heat shock factor (HSF) domain signature	48	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g02343	278	PRINTS	Heat shock factor (HSF) domain signature	10	33	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g02343	278	PRINTS	Heat shock factor (HSF) domain signature	61	73	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g02343	278	Pfam	HSF-type DNA-binding	10	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g02343	278	MobiDBLite	consensus disorder prediction	104	151	-	-
	Seca11g02343	278	MobiDBLite	consensus disorder prediction	243	278	-	-
	Seca11g02343	278	MobiDBLite	consensus disorder prediction	243	261	-	-
	Seca11g02343	278	SUPERFAMILY	"Winged helix" DNA-binding domain	6	100	IPR036390	-
	Seca11g02343	278	Gene3D	-	139	181	-	-
	Seca11g02343	278	FunFam	Heat stress transcription factor B-4	2	101	-	-
	Seca11g02343	278	Gene3D	-	2	102	IPR036388	-
	Seca11g02343	278	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	5	195	IPR027725	-
	Seca11g02343	278	MobiDBLite	consensus disorder prediction	105	144	-	-
	Seca11g02343	278	SMART	hsfneu3	6	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g02343	Seca-Chr11	36366700	36369431	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g02343	2	243	HSF	AT4G36990	55.422	1.79e-80	243

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Seca11g02343		HSF_DNA-bind	5.8e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g02343	K09419		-	gmx:100801897	360.533