Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca11g02339 | ATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATCCCGTGGGACGTTGATACTGAGGGCCTGAAAGAATATATGAGCAAATTCGGTGATCTGGAAGATTGTATTGTCATGAGGGAACGATCAACTGGTCGGTCTCGTGGTTTTGGATATGTTACATTTACATCAGTGGAAGATGCCAAGAATGTATTATCCAGTGAACACATGCTTGGTAACAGGATGCTGGAAGTCAAAGTGGCCACGCCAAAGGAGGAGATGAGGGCACCAGTCAAAAAGGTTACCCGAATCTTTGTGGCAAGAATTCCGCCATCAGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATACGGTGAGATAACAGATTTATACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACTTTTGCGAATGCAGATTCTGTGGAGAATTTGATGACAGAAACCCATGAGCTTGGAGGTTCTACTGTGGTTGTTGATCGAGCAACGCCTAAGGAAGATGATTTCAAGCCCATTGGCAGAATGTCACAAGGAGGATATGGTGCATACAATGCATATATTTCTGCAACAACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGACCATCCTGGTTCAATTTATGGAAGGGGAGAACCTTCTCGTGGAATAGGCAGAAAGATTTTTGTTGGTCGTCTTCCCCAAGAGGCAACCACTGAGGATCTTCGGCAGTATTTTGGAAGATTTGGCCGTATATTAGATGTTTATATTCCCAGGGATGCCAAGAGACCGGGTCATAGAGGTTTTGGTTTTGTGACTTTTGCTGAAGATGGTGTTGCAGATCGTGTCTCGCGAAGGTCTCATGAGATATGTGGACATCAGGTAGCCATAGATTCAGCCACACCTCTTGATGAAGCAGGGCCCAGTGGGAATTTTATGATGAATAGCATGGATTCTTTCAGGGGGTTTGGTGGTCCTGTACGAGCTTATGGGAGGATGTATGGTGGCCTAGATTTTGATGATTGGGGTTATGGAATGCCCAGTGGAAGACCATCAAGAGCAGATTGGAGGTATAGACCATACTAG | 1080 | 0.4426 | MEQRKLVVLGIPWDVDTEGLKEYMSKFGDLEDCIVMRERSTGRSRGFGYVTFTSVEDAKNVLSSEHMLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGEITDLYMPKDQGSKMHRGIGFITFANADSVENLMTETHELGGSTVVVDRATPKEDDFKPIGRMSQGGYGAYNAYISATTRYAALGTPTLYDHPGSIYGRGEPSRGIGRKIFVGRLPQEATTEDLRQYFGRFGRILDVYIPRDAKRPGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPLDEAGPSGNFMMNSMDSFRGFGGPVRAYGRMYGGLDFDDWGYGMPSGRPSRADWRYRPY. | 360 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca11g02339 | 359 | Gene3D | - | 1 | 83 | IPR012677 | - | |
| Seca11g02339 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 85 | IPR035979 | GO:0003676 | |
| Seca11g02339 | 359 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 2 | 83 | - | - | |
| Seca11g02339 | 359 | Gene3D | - | 84 | 174 | IPR012677 | - | |
| Seca11g02339 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 89 | 187 | IPR035979 | GO:0003676 | |
| Seca11g02339 | 359 | SUPERFAMILY | RNA-binding domain, RBD | 224 | 323 | IPR035979 | GO:0003676 | |
| Seca11g02339 | 359 | SMART | rrm1_1 | 93 | 164 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | SMART | rrm1_1 | 225 | 296 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | SMART | rrm1_1 | 5 | 76 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 224 | 300 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 226 | 280 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 6 | 68 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 94 | 151 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 223 | 344 | - | - | |
| Seca11g02339 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 92 | 168 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | Gene3D | - | 222 | 304 | IPR012677 | - | |
| Seca11g02339 | 359 | FunFam | RNA-binding family protein isoform 1 | 221 | 304 | - | - | |
| Seca11g02339 | 359 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 4 | 80 | IPR000504 | GO:0003723 | |
| Seca11g02339 | 359 | FunFam | heterogeneous nuclear ribonucleoprotein 1 | 84 | 176 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca11g02339 | Seca-Chr11 | 36283374 | 36291781 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca11g02339 | 5 | 293 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 25.503 | 3.63e-13 | 68.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca11g02339 | K14411 | - | gmx:100795240 | 658.677 |