Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02316 ATGGCTTCGAGATATGACTTAGTTAAAGATGTAAATGTTGGTTCTGACCATAAGATATGGAGGATCAAAGTAAGGGTAATTCGTTTATGGAGATCTGCTAACTTTAGGGACAATAACAATAATTCCGAGCCCATGATTGAAATGGTTGTGGTGGATGAGAAGGGGGACCGGATTCAATGCACTGTCAAGAGCTTTCATGTCTATCTGTTTGAAAGAAATATTCTGGAGGGCAATGTTTACATGATTTCAAATCTCTCAGTTGCTTTGAATGCTGCAAAGTTTAAACCAACTTTTCATGAATTTAGAATGTTCTTTAAAAGAGAAACTGAGGTTCGTTTGATTGAAGATTCTACTATACCAAACAATGTCTTCTCTTTCTTTCCATTCAAGGATATATTGAATGAGGAATTGGAAGATCGTCATTTAGTTGATGTAATCGGTCTCCTTTCTGATAAGGGTGACTTGATCGAGTTTAAAAGGAATGGCAAGATCTGTAACTATGTTGTTTTAGAGCTGGATGATCTTGAGGGTGGAAATAAGCTTCGATGCACTTTATGGGAAGATTTTGCTCATGATTTTCTTAGGCAGCTCGATGAGGATAAGTCAAATGTATCTGTTATTGTTTTGCAATTTGCAAAGATGAAGTTCTTCAAAGGTTCAATGGGGGTGTCCAATAATACTTACAATACTAAGATGTTTGTGAATCCAAATTTTCCTGAAGTTGCTGCTTTCAAGACTAAGATTCAGAATACTGACAATGAAATTAGTCAGTCGTTGACTCAATTGGCTGGTCCTGTGGTTCTATCTGCTGAAGAGGAATTTCTCCAGATTTTAGAATTCAAATCAATTGTTGATCTGAAGGAAATGGAGCAGAATGGTGTTTACTGCACTATTGGGACTGTTAAAGATATTGAATCTGAGTACAATTGGTGGTATCGTGCGTGCAAAAAATGCTCATGTGGAATGAAAATTGATGGGAAAATGTTTTACTGTAAGCATTGTGATGTTCATTATTCTTCTTTTGACACAAGGTATTCAATCCAAGTGAGGATTGTTGATGAGACTGATTCTGCTTCGTTCATGATTTTTGACAAAGAGGCTTCCAATTTTCTGGATCTTTCTGCAGCTGAATTTCGTATGGCATATGTTGCAAGGGGTGGGGACAAAAACAATCATCCAGAAGAGATTGATGCTTTCAAAGAAAAGAAAATTTTGCTCAAAGTGAACATTAAGATGCAAAATCAGTTTTCAGTTCTTCCAAATATCATTAAGGTCGTCAGATTGTGCTATGATGAGAATTTGATAAATGCTTTTATCCAAAAGTATAAGACTGAGGAAGTTGGTTTCATGGTGGACAATTCGGAAGTTATGACTCAATTCATTGAATCAAGTGATGTTATTAAGGACAACAACACACCTTTCCTGGATAATGTTGGCTGTGTGGATTGTAGTTTAAGACTCTTGAGTCTAAAATTGCAGAAAACACAATTACATCAATCTCCATTTTGGAAGAAATTCAATCAATGA 1527 0.3595 MASRYDLVKDVNVGSDHKIWRIKVRVIRLWRSANFRDNNNNSEPMIEMVVVDEKGDRIQCTVKSFHVYLFERNILEGNVYMISNLSVALNAAKFKPTFHEFRMFFKRETEVRLIEDSTIPNNVFSFFPFKDILNEELEDRHLVDVIGLLSDKGDLIEFKRNGKICNYVVLELDDLEGGNKLRCTLWEDFAHDFLRQLDEDKSNVSVIVLQFAKMKFFKGSMGVSNNTYNTKMFVNPNFPEVAAFKTKIQNTDNEISQSLTQLAGPVVLSAEEEFLQILEFKSIVDLKEMEQNGVYCTIGTVKDIESEYNWWYRACKKCSCGMKIDGKMFYCKHCDVHYSSFDTRYSIQVRIVDETDSASFMIFDKEASNFLDLSAAEFRMAYVARGGDKNNHPEEIDAFKEKKILLKVNIKMQNQFSVLPNIIKVVRLCYDENLINAFIQKYKTEEVGFMVDNSEVMTQFIESSDVIKDNNTPFLDNVGCVDCSLRLLSLKLQKTQLHQSPFWKKFNQ. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02316 508 Gene3D - 8 117 IPR012340 -
Seca11g02316 508 SUPERFAMILY Nucleic acid-binding proteins 7 116 IPR012340 -
Seca11g02316 508 SUPERFAMILY Nucleic acid-binding proteins 124 248 IPR012340 -
Seca11g02316 508 Gene3D - 269 440 IPR012340 -
Seca11g02316 508 CDD RPA1_DBD_A_like 21 111 - -
Seca11g02316 508 PANTHER OS03G0429900 PROTEIN 7 417 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca11g02316 508 CDD RPA1_DBD_C 283 436 IPR047192 -
Seca11g02316 508 Gene3D - 118 259 IPR012340 -
Seca11g02316 508 CDD RPA1_DBD_B_like 144 246 - -
Seca11g02316 508 Pfam Replication factor-A C terminal domain 297 414 IPR013955 -
Seca11g02316 508 SUPERFAMILY Nucleic acid-binding proteins 279 416 IPR012340 -
Seca11g02316 508 Pfam Domain of unknown function DUF223 47 138 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02316 Seca-Chr11 34993035 34996251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02316 20 382 Core DNA Replication Machinery Family AT2G06510 26.053 3.66e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02316 - - adu:107477146 441.039