Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02314 ATGGAGTATGTTCCTGGAAAGAACATTGCTATGCTTCCTCGATTATTTTGTATGGATCATTTGAATCATGTTAGCAAAAATGTTTTATTTCGAGACCCTGTTAACAATATTTTCCATATTGCTGTTCTCAAGACTGATGATGATCTTTATTTTACTTATGGGTGGTCGCTTTTAAGGGATGTGTTCCATTTGGAAAATGGTGCATGGATGAAATTTTACTTCTTCGATGAGAGTGAATTTTTTGTAAGGGTTTTTGATAGGAATATGGTTGAGTTCAACTATCCGGTGCCTTCAAATGTATATCACCATGGGGTAGGTGTTTCCCCTGACTTAACTGTTCCTTCTGCTTCCTGGTCTCGGGATTTCCATCATGCTTCAATTGACAAGGTTCTTTCTGAAAAGCAAGTGTCTTCAAACAGGATGACTATGCCTGTTGTGTTATGTAAATGCCTTCCCTTGAATGCATCAAATATTGTTCTAAGAGACGAAAATAGAACTGAATTTCAATGCCGTTTCAGGAGGGCTCCCAGAAGACGCAATGAGGGTTATATCACAAATGGGTGGCAAGAGTTTTGTAGTGCTAGAGGATTAAGTGGTGGTTGTGTAGTTCGTTTTAGTGTTAGTTCAGAGTCTATTAGGTTTGTTCAAGTCCAATACAAGTGGATTATTGTGGAGTTTGATAATACATCTGATGTTGCTGCTCTTCCATGGATGTTTTCACGAGTTTTTTACCATCACATTCCTTCAGAAGTTAATCTTTTTGATCGACATGGAAATGAATTTGTCGTTGAGGTTCATAAATCCAATGAATTTCTTATACTATCTGGAGGACTATCTTTAATCAGAGCCGTGTATAATTTAGTTAATGGCGGTTGGTTGAAAATGTTTTATTATGAGGAAAATGTCAATCAATTTTATTTTTCAGTTGAGGATAGAAATCTAGACAGGATTTTCTACGAAGGTCCAGTCATCAAAAGTGAATCAAATACTCCAACTCCCCATCTGTATGAGATTTTGAACACCCAACGTCAGATTGGAAGTACGAAGTTTCGGCGGTTTTACATTCCTTACGATCCCAAATTTGACCACACAGGGGCTTCATACATGTTTGCTCGTGATTTTTGTGAAGAAGTTGAAGATGTTGTTTATTTCAAAGATATAGATGGGAGAAGGATTACAATAACTGTCCAAAAAGATGAAGATCGTATTTATTTTGCAGTTGGATGGAAGGATATTGGAAATTTGTACAATCTGAAAGATGGTGGTTGGCTCAAAGTTGAATATCAGGCCTTTTCAACTAACAGTTTTCTTTTTGAAGTTTTGGACATGTTTTTAGTTCCTATTAAGTTTAGGGATTACAATTAA 1365 0.3641 MEYVPGKNIAMLPRLFCMDHLNHVSKNVLFRDPVNNIFHIAVLKTDDDLYFTYGWSLLRDVFHLENGAWMKFYFFDESEFFVRVFDRNMVEFNYPVPSNVYHHGVGVSPDLTVPSASWSRDFHHASIDKVLSEKQVSSNRMTMPVVLCKCLPLNASNIVLRDENRTEFQCRFRRAPRRRNEGYITNGWQEFCSARGLSGGCVVRFSVSSESIRFVQVQYKWIIVEFDNTSDVAALPWMFSRVFYHHIPSEVNLFDRHGNEFVVEVHKSNEFLILSGGLSLIRAVYNLVNGGWLKMFYYEENVNQFYFSVEDRNLDRIFYEGPVIKSESNTPTPHLYEILNTQRQIGSTKFRRFYIPYDPKFDHTGASYMFARDFCEEVEDVVYFKDIDGRRITITVQKDEDRIYFAVGWKDIGNLYNLKDGGWLKVEYQAFSTNSFLFEVLDMFLVPIKFRDYN. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02314 454 ProSiteProfiles B3 DNA-binding domain profile. 126 221 IPR003340 GO:0003677
Seca11g02314 454 SUPERFAMILY DNA-binding pseudobarrel domain 227 301 IPR015300 -
Seca11g02314 454 Gene3D - 116 221 IPR015300 -
Seca11g02314 454 SUPERFAMILY DNA-binding pseudobarrel domain 350 429 IPR015300 -
Seca11g02314 454 SMART B3_2 127 221 IPR003340 GO:0003677
Seca11g02314 454 Gene3D - 4 90 IPR015300 -
Seca11g02314 454 Gene3D - 346 443 IPR015300 -
Seca11g02314 454 Pfam B3 DNA binding domain 130 210 IPR003340 GO:0003677
Seca11g02314 454 SUPERFAMILY DNA-binding pseudobarrel domain 126 218 IPR015300 -
Seca11g02314 454 PANTHER B3 DOMAIN-CONTAINING 11 208 - -
Seca11g02314 454 SUPERFAMILY DNA-binding pseudobarrel domain 9 88 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02314 Seca-Chr11 34977198 34989760 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca11g02314 B3 1.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02314 - K03797 aip:110267180 52.7582