Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02311 ATGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTCTGTGACACTTTTTATAACACCACTCTCACCAATGAGTTACAGGGTAGTACTAGCAACACCACCACCACCAACACTAGCAGCATTTCAACCATATTTAACATTAACCCAAATGTAACAGTAACACCACCCTCTTTGATTGATTCTCCACCACTATCTTCCAATGTGAATTTCATCACCAACCCAATTCAACAACAAAACCACATGACACCACCCTTTCAACAAGAGGCTAATCCAACAGGGAGATTCAGGGGTAATAGTATAGGTAATCTCAACAATCCCTACCCTTCATCAGAGAAGAGAAACTCCATGGCTGCAATGAGGGAAATGATTTTCAGAATAGCAGTGATGCAACCGATTCACATTGACCCTGAATCCATCAAGCCACCAAAGAGAAGGAATGTGAAGATCTCCAAGGATCCTCAGAGTGTAGCAGCTAGACATAGAAGGGAAAGGATAAGTGAGAGGATAAGGATCTTGCAGAGATTGGTTCCTGGTGGGACTAAAATGGACACTGCTTCAATGTTAGATGAGGCTATACATTATGTGAAGTTCTTGAAGAAACAAGTGCAGACTCTGGAACAAGCAGGGGCAAATAGACCCATCGGTGGTGTTGGTGGTGGTTTCTCTTCTGCTTCAGGGATGCTAAACTCTAATAATAATGTGAATTATTCTGCTTTGTTGATGAAGGGTTGTCAACCTTATCAAATGCTTGGTTCTAGTTCTAAACAATTGCTTAGTTAG 783 0.4138 MMAMMMQMEKFPEFCDTFYNTTLTNELQGSTSNTTTTNTSSISTIFNINPNVTVTPPSLIDSPPLSSNVNFITNPIQQQNHMTPPFQQEANPTGRFRGNSIGNLNNPYPSSEKRNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRPIGGVGGGFSSASGMLNSNNNVNYSALLMKGCQPYQMLGSSSKQLLS. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02311 260 Gene3D - 149 213 IPR036638 GO:0046983
Seca11g02311 260 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 208 IPR036638 GO:0046983
Seca11g02311 260 SMART finulus 156 205 IPR011598 GO:0046983
Seca11g02311 260 Pfam Helix-loop-helix DNA-binding domain 160 199 IPR011598 GO:0046983
Seca11g02311 260 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Seca11g02311 260 CDD bHLH_AtIND_like 151 207 - -
Seca11g02311 260 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 25 253 IPR045843 GO:0003700|GO:0006355
Seca11g02311 260 Coils Coil 189 209 - -
Seca11g02311 260 FunFam BHLH transcription factor 153 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02311 Seca-Chr11 34864565 34865347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02311 107 227 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 75.385 9.55e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g02311 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02311 - - gmx:100796649 257.684