Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02307 ATGGATTGGGTACGAGGAGATTCAATTGGTAGAGGAAGCTTCGCTATTGTCAATTTGGCTAAACCAACCACAAGCAATTCCACTTGGTTTTCTTCTCCGACCGTTGTTAAATCCTCTGAGGCTTCAACCTCGTTTTCGCTCAAGAACGAGAAACATGTCCTTGATTGCTTAGGTTCATGCCGGAGAATCATTCGGTGTTTCGGCGATGACTACACCTTCGAGAATGGTGAAGAGTATTACAATTTATTCCTTGAATACGCCGCCGGCGGGAGTCTCGCCGATCAGCTCAAGTTCCACGGTGGCCGGATTCCGGAGCAACGAGTTCGGAGTTACACGAGGTCTGTTATCGAGGGGCTTATGCATATTCACAAGAACGGGTTTGTTCACTGTGATGTGAAGCTTCAGAACATACTCGTGTTTGATGATGGAGAGATCAAAATCGCTGATTTTGGTCTTGCTAAGGAAACAGGGGTGAAACAGAGCAAGTTTGAATGCAGGGGAACTCCCCTGTTTATGTCGCCGGAATCGGTTAACGACGGCGAGTATGAGTCGCCGGCGGATATTTGGGCTCTTGGGTGTGCGGTGGTGGAGATGGTGACCGGAAAACCTGCGTGGAATGTGGAGAAAGGTTCGAGTATGTGGTCGTTGTTGCTTCGAATTGGAGCGGGAGAAGAATTACCAGAGATACCAGAGGAATTGTCGAAGGAAGGAAGGGATTTTCTTGAGAAGTGTTTCGTGAAGGATCCGAGAAAGAGATGGACGGCTGAGATGCTTTTGAATCACCCTTTTGTGGATGGTGATGACATTGTTTCATTGACGAATGTGAAGAATGAGTCACCAAGAAGCCACTTTGATTTCCCTGATTGGGTTTCCAGTGTGGCGAGTTCACCGGAAGAGCCTTGCCGGTGGGATTTTGGTTCGTCGTGTAGTTTCTGTTCGCCGGTGGACAGGCTCCGGCAGCTCGTGACAGTTCAGATGCCGGAGAGTTGGTCGGAATCTGATAGTTGGACTAGTATTAGGTGA 1023 0.4858 MDWVRGDSIGRGSFAIVNLAKPTTSNSTWFSSPTVVKSSEASTSFSLKNEKHVLDCLGSCRRIIRCFGDDYTFENGEEYYNLFLEYAAGGSLADQLKFHGGRIPEQRVRSYTRSVIEGLMHIHKNGFVHCDVKLQNILVFDDGEIKIADFGLAKETGVKQSKFECRGTPLFMSPESVNDGEYESPADIWALGCAVVEMVTGKPAWNVEKGSSMWSLLLRIGAGEELPEIPEELSKEGRDFLEKCFVKDPRKRWTAEMLLNHPFVDGDDIVSLTNVKNESPRSHFDFPDWVSSVASSPEEPCRWDFGSSCSFCSPVDRLRQLVTVQMPESWSESDSWTSIR. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02307 340 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Seca11g02307 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Seca11g02307 340 ProSiteProfiles Protein kinase domain profile. 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02307 340 Gene3D Transferase(Phosphotransferase) domain 1 94 286 - -
Seca11g02307 340 CDD STKc_MAPKKK 2 264 - -
Seca11g02307 340 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 300 - -
Seca11g02307 340 SUPERFAMILY Protein kinase-like (PK-like) 3 303 IPR011009 -
Seca11g02307 340 FunFam Mitogen-activated protein kinase kinase kinase 17 2 293 - -
Seca11g02307 340 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Seca11g02307 340 SMART serkin_6 3 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02307 340 Pfam Protein kinase domain 5 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02307 Seca-Chr11 34738835 34739857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02307 1 340 MAP Kinase Kinase Kinase AT5G67080 53.221 2.26e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca11g02307 Pkinase 4.8e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02307 - - gmx:100798607 505.753