Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02302 ATGTGGATTGAAAGCGTTCTGTCTGCTGCCCTGAGGAAGAAAAGTGGCGAAGAAAGACAGCTTATTAGCTCAAAATTGGGTATTGCTGATTCCCAGCCCCTTGTCTGCTTTGCCCTTTGCACGGGAGCATTGTCAGATCCTGTGAGGATCACAGAGATTGCTGGTGTGGTGCTTTCCTTTGACCCCAAGCCAATTCAGGTTGATATTTTCCTTCCCTCTTTTAAGATCATTTTCCACAACACATTTTTTCTCCAACCCCTTTTGACCATTCATCCTTTTCTTTTATTTATTTATTTTTTGGTTGTTGAATTGGTATTGACTCTACTTTTTGGTAAGCATCAACTGCCTATTTGGACAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTCCTTATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCATATTTGTAACCTCAGTTGGGTTGTCAAGTGATCTGTTCGCAGGAAGGGAATTCTCAGTGACTTCCCTGTCAGTGACTGTGGGCAGAGAAGAGGATTAA 546 0.4322 MWIESVLSAALRKKSGEERQLISSKLGIADSQPLVCFALCTGALSDPVRITEIAGVVLSFDPKPIQVDIFLPSFKIIFHNTFFLQPLLTIHPFLLFIYFLVVELVLTLLFGKHQLPIWTANQVAHVNCGNCRMLLMYQYGARSVKCAVCIFVTSVGLSSDLFAGREFSVTSLSVTVGREED. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02302 181 Pfam LSD1 zinc finger 128 150 IPR005735 -
Seca11g02302 181 NCBIfam zinc finger domain, LSD1 subclass 125 153 IPR005735 -
Seca11g02302 181 PANTHER PROTEIN LSD1 114 156 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02302 Seca-Chr11 34611876 34614152 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca11g02302 zf-LSD1 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02302 - - gmx:100818616 87.4261