Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02301 ATGCAACACAACATTAAGAACCAAGCTAACAGGTTTTCTGTCATAAATGGAAAAGATAGCTCTCAAATCAAATCACAAATCAGGTTGTATTCCTCCATCTTCTGCTGCATAGCTGTTGTAATTTTCATCTCAGGCCTCCTTCAACACTACAATTTTGCCATCATGGGAGAGAGGTTGCTAAAAAGGGTGAGAGAATTTTTGCTAGAAAAGGTGCTAACTTTTGAGGTAGGATGGTTTGACCAAGAGGAGAACACAAGTGCAGCAATTTGTGCACGTTTGGCAACTGAAGCCAACTTGGTTAGATCCCTTGTTGCAGAAAGAATTTCATTCTTAGTTCAGATTTCTGTCACAGCTACACAAGCTTTTGTACTTGGTTTAATTGTTTCATGGACGGTGACTATTATCATGATTGGTATGCAGCCTTTGATCATTGCATGTTTATACTCAAAAAGCATTCTCATGAAAAGCATGTCAAGCAAAGCAAGAAGTTCTCAAAGAGAGGGTAGTCAATTAGCAATGGAAGCTACTATTAACCATAGGACTATAGCTGCATTCTCATCTGAGAAAAGGATGCTAAATTTGTTCACAACTGCTATGGAGGGCCCCAAGAAGGAAAGCATCAAGCAATCATGGATTTCAGGTTCCATATTGTCAGTGTCACAATTTATAACAACAACATCTATAACTTACTTTTTGGTATGGTGGCAGGTTATTGAATCAAGGGTTAGTGGAATCAAAACACCTTTTGCAAGTTTTCCTCATTTTGATGGGCACTGGAAAAGTAAAACACCTTTTGCAATACAGGTTTTCCTATCTACCCCCTTTTCCATGGCTCTATTTCTCTTTACTATTTTAATGTTGATGGTCTCTTCAAGAAATGCCTACTGGCCACCTTCACCTAGCTACTGGGCAAGTTCCAAATTCAGGTCTTTGAGTTTTTCCAAAGGATTTAGAAACTGGGGCCCTCAACACCAATCACTATACCAAAATACATTAACAGTTTGGCTTGATAGAACGATAGAGAAGAAAGCAAGACCACAAGAGCAATGTCCAAGGTTGATTACTCTATCCCTGTCTCCAGTGTTTAAGAAACCCACACCAAAGCAAATTCCATTTTTTAAGAAGCCATTTCCGTTTTACCCATATGGTCCTCAACCCAAATTCCATTTTTCCCATCCCAGCTGCAACTTCCCAGCAACAGCAACAGTCCACTTCAAATCCCAATCCACAAATTCTCCCCCAACACTTCAAACAATAATCCAACAAAGAGGAACTAGAACTTGGATCCAACCCTAA 1296 0.3951 MQHNIKNQANRFSVINGKDSSQIKSQIRLYSSIFCCIAVVIFISGLLQHYNFAIMGERLLKRVREFLLEKVLTFEVGWFDQEENTSAAICARLATEANLVRSLVAERISFLVQISVTATQAFVLGLIVSWTVTIIMIGMQPLIIACLYSKSILMKSMSSKARSSQREGSQLAMEATINHRTIAAFSSEKRMLNLFTTAMEGPKKESIKQSWISGSILSVSQFITTTSITYFLVWWQVIESRVSGIKTPFASFPHFDGHWKSKTPFAIQVFLSTPFSMALFLFTILMLMVSSRNAYWPPSPSYWASSKFRSLSFSKGFRNWGPQHQSLYQNTLTVWLDRTIEKKARPQEQCPRLITLSLSPVFKKPTPKQIPFFKKPFPFYPYGPQPKFHFSHPSCNFPATATVHFKSQSTNSPPTLQTIIQQRGTRTWIQP. 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02301 431 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 14 243 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca11g02301 431 SUPERFAMILY ABC transporter transmembrane region 18 240 IPR036640 GO:0005524|GO:0016020
Seca11g02301 431 CDD ABC_6TM_Pgp_ABCB1_D2_like 12 235 - -
Seca11g02301 431 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 31 236 IPR039421 -
Seca11g02301 431 Gene3D ABC transporter type 1, transmembrane domain 14 227 IPR036640 GO:0005524|GO:0016020
Seca11g02301 431 Pfam ABC transporter transmembrane region 20 230 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02301 Seca-Chr11 34609887 34611688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02301 12 235 Calmodulin-binding Proteins AT2G36910 36.607 4.16e-33 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02301 K05658 - gmx:100804664 325.479