Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02290 ATGAGTCTTGTTAGCGTCATCTCCACCAGTTCAATCCAGGCACCGAGTCACAATAACGGTTACTCAACTACAAATATCCATTTAACCCCATGGGATCTCCAACTCCTGCCAGTTGAACCAATCCAAAAAGGGCTTCTTTTTCACAAACCTGAAGACATATCAAACCATATTATCCATCACTTGAAACGATCCCTTTCCTCAACTCTTGCCCTCTTCCCACTTCTCACAGGTCGTCTAATTATCACTGAACACGAAGATAACACCACCTCCTCTTTCATCGCTTGCAACAACAAAGGTGCACTGTTTGTCCATGCAACAACAAAGAACACTAGTGTTGCTGACATCCTTCAGCCCACACACGTTCCTCCCATTGTCCACTCCTTCTTTCCACTCAATGGTGTTAAAAACTATGAGGGCACAACACAACCATTACTTGCAGTGCAAGTGACGGATTTAGTTGACGGCATCTTTATTGGTTGCACAATGAACCACTTGGTTGGTGACGGCAAGTCGTTTTGGCTTTTCTTCAATTCTTGGGCTGAAATCTCACGGGGTTACCAAATATCAAAAATCCCTACATTTAAACGTTGGTTTCTGGATGGCATTGACTGTCCCATACGATTTCCTTTCACACAAAAGGAAAACTCTAAAAGCGACGTCGTACCACCAGAGAGGGTCTTCCATTTCACAAAGGAGAAAATTGCACAACTCAAATCCAAAGCAAACAGAGAGGCCAACACGAATAAAATATCTTCTCTGCAAGCGCTTTTAACTCACCTTTGGCGCTCTGTGATCCGTTGCAAACAACTTGACCCTCAAGAAGAGGTTCATTATTTCTTGCTGATAGGCGTTAGACCCAGGTTGGTTCCTCCGTTGCCAGAGGATTATTTTGGGAATGCGGCATTGCTTAGTTGTGTCACCATGAAAGCAGGGGAACTACTGGAGGGTGGGCTTGGGAAGGCTGCTTTGGAGATGAACAAGATGATTGCTTTGAACTCTGATGAGAAGGTAAAGAAGCACTATGAGTCTTGGGTGAGAACACCAAAGTTGATTACGCTGAGTAGTGTGAGCAGTAGTAATTCCTTTGTAACTAGTAGTTCCCCAAGGTTCGATGTTTACGGCAATGATTTTGGTTGGGGAAAGCCTTTAGCTGTTCGAAGTGGTGGAGCACAAAAAAGAAATGGAAAGATTACTGTGTTTGCCGGGGCAGAAGAAGGTAGTGTGGACATTGAAGTGTGCCTTCCTTATGAGATTTTGGTGGACCTTGGAAATGACCCTGAGTTCATGGATGCCATTTCCAACTATTATAGGTTTGCAAAAGAATGTTAA 1329 0.4379 MSLVSVISTSSIQAPSHNNGYSTTNIHLTPWDLQLLPVEPIQKGLLFHKPEDISNHIIHHLKRSLSSTLALFPLLTGRLIITEHEDNTTSSFIACNNKGALFVHATTKNTSVADILQPTHVPPIVHSFFPLNGVKNYEGTTQPLLAVQVTDLVDGIFIGCTMNHLVGDGKSFWLFFNSWAEISRGYQISKIPTFKRWFLDGIDCPIRFPFTQKENSKSDVVPPERVFHFTKEKIAQLKSKANREANTNKISSLQALLTHLWRSVIRCKQLDPQEEVHYFLLIGVRPRLVPPLPEDYFGNAALLSCVTMKAGELLEGGLGKAALEMNKMIALNSDEKVKKHYESWVRTPKLITLSSVSSSNSFVTSSSPRFDVYGNDFGWGKPLAVRSGGAQKRNGKITVFAGAEEGSVDIEVCLPYEILVDLGNDPEFMDAISNYYRFAKEC. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02290 442 Gene3D - 4 205 IPR023213 -
Seca11g02290 442 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 429 - -
Seca11g02290 442 Pfam Transferase family 22 429 - -
Seca11g02290 442 Gene3D - 223 424 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02290 Seca-Chr11 33991754 33993082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02290 45 417 Monolignol Biosynthesis Gene Families AT5G48930 27.456 3.96e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02290 - - gmx:100797643 565.844