Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02281 ATGTGTTCATCTCTCTTTTACAGTGCTTATGATAGAGCTGCTATTAAGTTCCGAGGTGTTGAGGCAGACATAAACTTCAGCATAGAGGATTATGAAGAGGATTTGAAGCAGATGAGCAATTTGACAAAGGAAGAGTTTGTGCATGTACTTCGCCGACAAAGCACTGGGTTTCCAAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGGAGATGGGAAGCTAGAATGGGCCAATTTTTAGGGAAAAAGTACGTTTATCTGGGTTTGTTTGATACTGAGATTGAAGCTGCAAGGGCTTATGACAAGGCAGCAATAAAATGCAACGGCAAAGAGGCGGTCACCAATTTTGATCCCAGCATCTATGAGAATGAGCTTAATTCTGCAGAATCTACAGGTAACGCTGCAGATCACAATCTGGATCTAAGTTTGGGGAATTCAAGTTCAAAGCCTGGGAATAGTCAAGCATTTGGGAATCACACCACAAATGCTGCAAATCATGAGCAACACTTACAATCTGAATCTAATTGGCGGAATGGGGGAAATAAGCCTAAGCTGGTGAATATATTGCCAAAACCGTGTCATAGAAGCAACAATGAAGCGCAAAGAAAGGATGTGCATGGTGAGAGTGAAGCATTGCGGATGCTAAGTCAAACTCACCTTCATTCTAATGAAATGCAAAGATATGGTCCCTATAGGTCTTCTGGGGAGTCTCCAATGCTTCACAATTTTGCACATGTTCACCCACCAAATTTTCATTTTCCAAGCAGCAGCTATGGAGGCCGTGTAGGAAGTGATCTTTCACTATCAACGAGTGATCATCAACAACAGTGGCAATCCGGGCCTTCACATTATTTAGCAAGTGCTGCAGCATCATCAGGATTCCCTCCTCAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCTTGA 966 0.4317 MCSSLFYSAYDRAAIKFRGVEADINFSIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSAESTGNAADHNLDLSLGNSSSKPGNSQAFGNHTTNAANHEQHLQSESNWRNGGNKPKLVNILPKPCHRSNNEAQRKDVHGESEALRMLSQTHLHSNEMQRYGPYRSSGESPMLHNFAHVHPPNFHFPSSSYGGRVGSDLSLSTSDHQQQWQSGPSHYLASAAASSGFPPQIRPSSQGWLQKNGFHTLMRPS. 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02281 321 Gene3D AP2/ERF domain 62 121 IPR036955 GO:0003700|GO:0006355
Seca11g02281 321 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Seca11g02281 321 MobiDBLite consensus disorder prediction 269 307 - -
Seca11g02281 321 MobiDBLite consensus disorder prediction 130 184 - -
Seca11g02281 321 FunFam AP2-like ethylene-responsive transcription factor 62 122 - -
Seca11g02281 321 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Seca11g02281 321 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Seca11g02281 321 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 219 - -
Seca11g02281 321 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Seca11g02281 321 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Seca11g02281 321 SUPERFAMILY DNA-binding domain 62 122 IPR016177 GO:0003677
Seca11g02281 321 MobiDBLite consensus disorder prediction 130 209 - -
Seca11g02281 321 CDD AP2 62 122 IPR001471 GO:0003700|GO:0006355
Seca11g02281 321 MobiDBLite consensus disorder prediction 269 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02281 Seca-Chr11 33624896 33628259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02281 15 157 AP2-EREBP Transcription Factor Family AT4G36920 84.932 1.43e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g02281 AP2 1.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02281 K09284 - gmx:100792442 553.518