Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02275 ATGGAAGGTGAAGGGAGAAGAGGAAGAGAAAAAGAAAAGAGAGGAACAGAGGTTGATACAACAACGAGGTACAAAGGAATCAGGATGAGGAACTGGGGAAAGTGGGTTGCTGAGATTCGAGAACCCAACAAGCGTTCTCGGATTTGGCTCGGTTCTTATTCCACTCCGGTTACGGCAGCGCGTGCTTATGACACCGCCGTTTTCTATCTCCGGGGACCATCTGCTCGCCTTAACTTCCCAGGACTTTTCACCGGAGAAGGTGGCGGCACCACCTCCGCCGCTTCGGATATGTCCGCGGCTATCGTAAGGAAGAAAGCCGCGGAGGTCGGTGCTAGAGTCGACGCCCTTCACCGCCAGCATCCACGTGCTTCCGCCGCCGGGGAATTCGCGGAACGGGTCGACCTAAATAAGATACCCGAAGCCGATAATTCGGATTGTGACTGGGACAGGGACTAG 456 0.5482 MEGEGRRGREKEKRGTEVDTTTRYKGIRMRNWGKWVAEIREPNKRSRIWLGSYSTPVTAARAYDTAVFYLRGPSARLNFPGLFTGEGGGTTSAASDMSAAIVRKKAAEVGARVDALHRQHPRASAAGEFAERVDLNKIPEADNSDCDWDRD. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02275 151 CDD AP2 22 80 IPR001471 GO:0003700|GO:0006355
Seca11g02275 151 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Seca11g02275 151 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Seca11g02275 151 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Seca11g02275 151 PRINTS Ethylene responsive element binding protein signature 62 82 IPR001471 GO:0003700|GO:0006355
Seca11g02275 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 11 145 - -
Seca11g02275 151 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Seca11g02275 151 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Seca11g02275 151 FunFam Ethylene-responsive transcription factor 2 22 81 - -
Seca11g02275 151 Pfam AP2 domain 22 72 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02275 Seca-Chr11 33178293 33178748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02275 24 149 AP2-EREBP Transcription Factor Family AT2G23340 61.224 4.01e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca11g02275 AP2 2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02275 K09286 - gmx:100784157 220.32