Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02252 ATGGCTCTCAGAGATGAAGATGCACAACACCACTCTCCTTCATTCCTTGATGCCCTTCTCTGTGAAGAGCAAGATACCTTTGAAGAAGATCTTGATGATGCAAACGGTTCTGAGGTTGAGACCAATACCCATGACCCTTCTGCCCCAAAGTTGCAATCTTTGCCCTTGATTTTGCTGGACAATGACTTGTTCTGGGAAGATGATGAACTTGTCTCCTTAATCTCAAAAGAGGGAGAAGAGACCCGTTTGTCTTCTCGTAATCTCATTGCTAATGGACCCTTAGAAGGACCTCGTGTTGAGGCTGTGACCTGGATTTCTAAAGTTTGTGCTCACTATGGCTTCTCTGCTTTGACAACTGTTCTTGCTGTTAACTACTTTGATAGGTTCATCACAAGCCTCACGTTTCAGAGGGATAAGCCATGGATGACACAGCTCACTGCTGTTGCTTGTTTGTCCCTTGCTGCCAAAGTGGAAGAGACTCATGTGCCACTTCTTTTAGACCTGCAAGTGGAGGAATCAAGATTCGTGTTTGAAGCAAAGACTATACAGAGAATGGAGCTTCTAGTGTTGTCAACTCTTAAATGGAAGATGCATCCTGTGACCCCAATTTCCTTCTTTGAACACATTGTTAGAAGGCTTGGTTTAAAGAGTCGCTTGCATTGGGAGTTCCTTTGCCGTTGTGAGAGAGTTCTTCTCAATGTCATTGCGGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTAGCTGCTGCTACAATGATCCATGTTATTAAAAAGATTGAGCCATTTAATACAACTGAGTACATTGATCAACTTCTCAGTTTACTAAAGATTAGTGAGGAACAAGTGGACAAGTGCTACAAACTCATACTGAAATTAGTAGTTTGCCATGAAGGCATTTACAATCTTAATCAGAAACGCAAGCGCCTATCTGAACCAAGTAGCCCAGGTGGTGTCATTGATGCATCTTTCAGTTGTGACAGCTCAAATGATTCATGGACTATGGCATCATCATTCTCACTTCCACTGGAGCCACTGCTTAAGAGGAGAAGAGCTCAGGATCAGCAGTTGCAGTTGCCTTTGGTTAATCATGTGCCCATTGATGTTCTTAATAGCCCTTGTTAA 1125 0.4267 MALRDEDAQHHSPSFLDALLCEEQDTFEEDLDDANGSEVETNTHDPSAPKLQSLPLILLDNDLFWEDDELVSLISKEGEETRLSSRNLIANGPLEGPRVEAVTWISKVCAHYGFSALTTVLAVNYFDRFITSLTFQRDKPWMTQLTAVACLSLAAKVEETHVPLLLDLQVEESRFVFEAKTIQRMELLVLSTLKWKMHPVTPISFFEHIVRRLGLKSRLHWEFLCRCERVLLNVIADSRVMSYLPSTLAAATMIHVIKKIEPFNTTEYIDQLLSLLKISEEQVDKCYKLILKLVVCHEGIYNLNQKRKRLSEPSSPGGVIDASFSCDSSNDSWTMASSFSLPLEPLLKRRRAQDQQLQLPLVNHVPIDVLNSPC. 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02252 374 PANTHER CYCLINS 72 295 IPR039361 -
Seca11g02252 374 Gene3D - 98 198 - -
Seca11g02252 374 Pfam Cyclin, C-terminal domain 200 298 IPR004367 -
Seca11g02252 374 CDD CYCLIN_AtCycD-like_rpt2 200 290 - -
Seca11g02252 374 SMART Cyclin_C_2 200 328 IPR004367 -
Seca11g02252 374 FunFam D3-type cyclin 91 198 - -
Seca11g02252 374 SUPERFAMILY Cyclin-like 64 198 IPR036915 -
Seca11g02252 374 FunFam CYCLIN D32 199 288 - -
Seca11g02252 374 Pfam Cyclin, N-terminal domain 82 197 IPR006671 -
Seca11g02252 374 Gene3D - 199 288 - -
Seca11g02252 374 SUPERFAMILY Cyclin-like 182 298 IPR036915 -
Seca11g02252 374 SMART cyclin_7 103 191 IPR013763 -
Seca11g02252 374 SMART cyclin_7 208 292 IPR013763 -
Seca11g02252 374 CDD CYCLIN_AtCycD-like_rpt1 98 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02252 Seca-Chr11 31857563 31859736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02252 1 364 Core Cell Cycle Gene Families AT5G67260 50.938 4.88e-114 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02252 K14505 - gmx:100785030 602.053