Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02249 ATGATATATTATTTGTTGTTATTGTTAGTTAAAAGGAAAGAAAAGAGAAGTGATGACTTGTGTAAAGGGAAGCAGCTGAGATCTGACGCGTGTCCAAATACAGCTGTATCCCAAATCCAAAAGCAACCGCTTCCATGGAATAAGCGGAGGGAAATGGATCGGATCAAGGGCCCTTGGAGCCCGGAAGAGGATGAGGCCCTTCAGAAGCTGGTGGAGAAGCACGGGCCCAGGAACTGGTCCCTGATCAGCAGGTCCATCCCGGGCCGGTCCGGGAAGTCCTGCAGGCTTAGATGGTGCAACCAGCTTTCACCTCAGGTAGAGCACCGGGCTTTCACACCCGAAGAGGACGAGACCATAATCAGGGCCCATGCCCGGTTCGGAAACAAGTGGGCCACAATAGCCCGTCTCCTCTCCGGTCGAACCGATAACGCCATAAAAAACCACTGGAATTCCACTCTCAAGCGCAAGTGCGCTTCCTTCATCGGAGCAAACAGCGACGATCCCGCCGCCGCAGCCGCCGGTGGTTACAGCCCTCAGCCGCTCAAGAGGTCCGCAAGCTCCGGCGCGCCGGGGAGCCCTTCGGGCTCCGATATGAGCGATTCCGGTGTTCCCGCCGTCATGTCTCCTTCACACGTGTTCCGGCCCGTGCCGGTTCGACCGCCTGTGGAAACGACGTCGTCGTCACACGAGGACGACGATGGTCCTCCTACTTTGCTATCGCTTTCTCTTCCCGGCGTGGACTCATCGGAAGTGTCGAATCGGGCAACGGCGGCGGTGCCGATCAGTCCTGTGCCGATAACCACCGTAACTGCTCAGGCTCCGGTGGCGGCGCAAGAGGTTGGGTTGGGGCCGTTGAATTTCAGTGCGGAGTTGATGGCGGTGATGCATGAGATGATAAGAAATGAAGTGAGGAGTTACATGGAGCAGCAACAAAATGGGATGTGTTTTGAGGGTGTTGATGGGTTCAGGAACATGTCTGTGAAGCGAATTGGGATTAGCAGGGTCGATTCCTAA 1014 0.5582 MIYYLLLLLVKRKEKRSDDLCKGKQLRSDACPNTAVSQIQKQPLPWNKRREMDRIKGPWSPEEDEALQKLVEKHGPRNWSLISRSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDETIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFIGANSDDPAAAAAGGYSPQPLKRSASSGAPGSPSGSDMSDSGVPAVMSPSHVFRPVPVRPPVETTSSSHEDDDGPPTLLSLSLPGVDSSEVSNRATAAVPISPVPITTVTAQAPVAAQEVGLGPLNFSAELMAVMHEMIRNEVRSYMEQQQNGMCFEGVDGFRNMSVKRIGISRVDS. 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02249 337 CDD SANT 110 153 IPR001005 -
Seca11g02249 337 PANTHER MYB PROTEIN-RELATED 56 210 - -
Seca11g02249 337 SMART sant 107 155 IPR001005 -
Seca11g02249 337 SMART sant 55 104 IPR001005 -
Seca11g02249 337 MobiDBLite consensus disorder prediction 170 246 - -
Seca11g02249 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 157 IPR017930 -
Seca11g02249 337 CDD SANT 58 100 IPR001005 -
Seca11g02249 337 MobiDBLite consensus disorder prediction 180 203 - -
Seca11g02249 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 106 IPR017930 -
Seca11g02249 337 FunFam Transcription factor MYB44 110 156 - -
Seca11g02249 337 Pfam Myb-like DNA-binding domain 59 117 - -
Seca11g02249 337 Gene3D - 109 168 - -
Seca11g02249 337 Gene3D - 55 107 - -
Seca11g02249 337 ProSiteProfiles Myb-like domain profile. 51 102 IPR001005 -
Seca11g02249 337 ProSiteProfiles Myb-like domain profile. 103 153 IPR001005 -
Seca11g02249 337 FunFam MYB transcription factor 56 107 - -
Seca11g02249 337 SUPERFAMILY Homeodomain-like 53 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02249 Seca-Chr11 31700933 31702198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02249 49 336 MYB Transcription Factor Family AT4G37260 51.964 2.96e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g02249 Myb_DNA-bind_6 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02249 K09422 - gmx:100806145 370.163