Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02248 TACCTCAATTTGCAGGGGATATTACTCAAAGGTGGGCATGTTTTGGATGCTCTAGCTTCTTGTCATACTATTGCATTTGACAAAACGGGGACATTGACAACTGGTGGACTTGTATTCAAGGCAATTGAGCCCATTTATGGTCATCACATTAAAAAGAAGGAATCAAACATTTCTTCCTGTTGCATTCCCTCCTGTGAAAAAGAAGCTCTTGCTGTTGCTGCAGCTATGGAAAAGGGCACTACTCACCCAATTGGAAGGGCTGTGGTTGACCATAGTGAAGGCAAAGACCTCCCATCTATTGCTGTTGAAAGTTTTGAATACTTTCCTGGTAGAGGCCTTACCGCCACTGTTAACAGCATTGAGTCAGGAACTGGAGGCGCTAAAGTATTGAAAGCATCACTTGGATCTGTAGATTTCATCACTTCATTTTGTCAATCTGAAGATGAATCAAAAAAGATCAAGGAAGCTGTCGACACATCTTCTTATGGAAGTGAATTTGTCCATGCTGCCCTTTCAGTTAATCAAAAGGTAACATTGATTCACCTAGAGGATAAGCCTCGTCCAGGGGTTTTTAATGTTATTCAAGAATTGCGAGATGAAGCAAAGTTTCGTGTGATGATGTTGACCGGTGATCATGAATCTAGTGCTAGGAGAGTTGCAAGTGCTGTGGGCATCAATGAGTTTCACTGCAACCTGAAGCCTGAAGATAAGCTGAGACATGTAAAGGATATCTCAAGAGATATGGGGGGAGGCTTAATTATGGTTGGTGAAGGTATTAATGATGCTCCAGCACTTGCAGCTGCAACTGTTGGGATTGTTCTTGCTCATCGTGCTAGTGCAACTGCCATAGCTGTTGCTGATGTGTTGTTGCTTCGAGAAAATATTTCCGCAGTGCCATTTTGTATTGCCAAATCTCGCCAAACAACCTCACTGATTAAGCAAAATGTGGCTCTGGCATTGTCATGCATTGTCATGGCTTCCCTTCCGTCTGTTTTGGGATTTCTGCCATTGTGGTTGACGGTATGA 1026 0.4288 YLNLQGILLKGGHVLDALASCHTIAFDKTGTLTTGGLVFKAIEPIYGHHIKKKESNISSCCIPSCEKEALAVAAAMEKGTTHPIGRAVVDHSEGKDLPSIAVESFEYFPGRGLTATVNSIESGTGGAKVLKASLGSVDFITSFCQSEDESKKIKEAVDTSSYGSEFVHAALSVNQKVTLIHLEDKPRPGVFNVIQELRDEAKFRVMMLTGDHESSARRVASAVGINEFHCNLKPEDKLRHVKDISRDMGGGLIMVGEGINDAPALAAATVGIVLAHRASATAIAVADVLLLRENISAVPFCIAKSRQTTSLIKQNVALALSCIVMASLPSVLGFLPLWLTV. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02248 341 SUPERFAMILY HAD-like 23 340 IPR036412 -
Seca11g02248 341 ProSitePatterns E1-E2 ATPases phosphorylation site. 27 33 IPR018303 -
Seca11g02248 341 NCBIfam HAD-IC family P-type ATPase 135 334 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g02248 341 Gene3D - 18 306 IPR023214 -
Seca11g02248 341 Pfam haloacid dehalogenase-like hydrolase 23 268 - -
Seca11g02248 341 SFLD Haloacid Dehalogenase 7 308 - -
Seca11g02248 341 SFLD p-type atpase 7 308 IPR044492 -
Seca11g02248 341 PRINTS H+-transporting ATPase (proton pump) signature 287 312 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g02248 341 PRINTS H+-transporting ATPase (proton pump) signature 255 271 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g02248 341 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 5 341 - -
Seca11g02248 341 Gene3D - 36 186 IPR023299 GO:0000166
Seca11g02248 341 PRINTS P-type cation-transporting ATPase superfamily signature 178 189 - -
Seca11g02248 341 PRINTS P-type cation-transporting ATPase superfamily signature 279 291 - -
Seca11g02248 341 PRINTS P-type cation-transporting ATPase superfamily signature 201 211 - -
Seca11g02248 341 PRINTS P-type cation-transporting ATPase superfamily signature 25 39 - -
Seca11g02248 341 PRINTS P-type cation-transporting ATPase superfamily signature 255 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02248 Seca-Chr11 31642420 31644880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02248 5 341 Primary Pumps ATPases AT4G37270 77.745 1.53e-178 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02248 K01534 - gmx:100776309 618.231