LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g02240	ATGGCAACTCTTCAGCTCCACAGAATTCAACACTCTCTGTTTTTAGTTGTTTTTCTTCTTCAATTCTCATCACTGCAGTTTCCCTCACTAGGGTACAATTTCCCAGACAGGTATTTCATCAATTGTGGTTCAGACAGTGATGTAACCGAAAGTGGCCACCGTTACGTTGGGGAATCAAACCCTATAGCAAGTTTCAGCAGCAACAGCAATACAGAAAGCAATCAATCAACAGTGCCTTCACCTCTGTACCAAACAGCAAGAATTTTTCGAAGTCAATCTTGGTATGAGTTCACTACTGATATCAATAGCACCTATCTGCTACGCCTCCATTTCTGTGCTTTCTCTTCGCCGAGTAATCTTTTCACAGCTAAGTTCAACGTTTCAGTTCCTGGCTTCTGGCTTTTGCCAAATTTGGATGCCAGAAATACTACTAACTCTGCTTTAGTGAAAGAGTTCTACATGAAAATCACTCGCCCCAAATTCAAAATCACTTTCACACCTCTAGCATCATCATTCGCGTTTGTAAATGCTATAGAACTCTTTGTCCTCCCCCTCCATTTGATGGCCGATTCAGTCGCACGTTTCACTTATGGCAATGATAGCAAATTACTCTCTCGGACATTGGAAACCAAACATAGGATCAACGTTGGTGGCCAAACAGTGACAAGGGACAACGATAACTTATTGAGAGACTGGTCTCCTGATGATAGTTTTCTCACTAATCCGAGAAACGCGAAGAATAGTTCCCAGTACAATGGTGAAATTAAGTACCATGTCCCCGATGACTCTGACGGTCCAAATTCAAATCAATATACTGCCCCAAATGCTGTCTACCAAACTGCTAAAGAGATTAATAACATCTCTGCCATTGCTGCTGCAGACTCCATAACTTGGGATCTTCCCGTGGAGAAGAACACAGATCATCTCGTTCGGCTTCACTTTTGTGACATTTTTAATGTACAGAGTGGTCTTACAATCTTTATACTGTTCATTTACGACAGTTATGTTATCAATGTTAATGACGATGAGAAGCTTTCCAGCCAGTTGCCTAATCCTTATTTTTATGATTTTGTGGTTCACTCTGATGACTCTGGGTTCATGAAGATCAGTATAGCACCTAATGCATCTGTTCCTCAACCAAATGCGTTTTTAAACGGACTAGAAATAATGAAACTGATTGAATCATCAGGTTCTGCTCCCCAGGACCTGGATGACTCCAACTCCAACCATAGTAGTCTTCCCGTGGTGCTGGGTTCAGCTCTTGGAGGTTTAGTTCTGGTTTCTGTTGTGATAGCTGGTGGGTTTCTTTGGCGTCGTAAGATGAGGAAACAAAAGCCAGTTGAGAATTCTGATTGGTTGCCAATTCCCATGACTGCTGGAGGGAGTTCTCACAGCAGATTGACTGAGGGAACCACACAAGGCTCCCCTCTTCCCAACATAAATCTTGGCCTAAAAATCCCCTTGCTTGATCTTCAATCGGCAACCAAGAACTTTGATGCAAAGCAGATAATTGGCAAGGGTGGTTTTGGAAATGTCTATAAGGGGGTTCTGAAGAATGGCATAAGAGTGGCTGTGAAAAGAGGTGAGCCAGGGTCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCCAAGATTCGTCACAGGCACCTTGTTTCCTTAATTGGGTATTGTGATGAAAGGTATGAGATGATTCTGGTTTATGAGTATATGGAGAAAGGGACACTCAGAGACCATTTGTACAATACAAAATTGCCAACCTTGTCTTGGAAGCAGAGGCTTCAAATTTGTATTGATGCTGCTAGAGGTCTTCATTACCTTCACAAAGGAGCATCTGGGGGAATCATTCACCGTGATGTGAAATCCACCAACATATTGCTTGATGAGAACCTTGTGGCTAAAGTTGCTGACTTTGGCCTTTCAAGGACAGGTCCTCTAGATCATCAACCTTATGTCAGCACTGGTGTTAAAGGCACTTTTGGGTACCTTGATCCTGAGTATTTTAGGTCACAACAGCTGACAGAAAAATCTGATGTGTATTCATTTGGGGTAGTTCTTCTTGAAGTTTTATGTGCAAGACCAGCCATTGATCCATTGCTTCCAAGGGATCAGGTGAACTTGGCTGAATGGGGAATGCTGTGCAAAGACAAGGGGATACTTGAAGAGATCATTGACCCTTCCATCAAGGGGCAAATAGAACAAAACTCACTCAGAAAGTTTAGTGACACTGTAGAGAAGTGCTTACAAGAAGATGGTTCTGATAGGCCAACAATGGGTGATGTGTTGTGGGACTTGGAGTATGTGTTGCAGCTTCAGCGAGGTGCAATACACAGAGAGCCACATGAGGATAGTTCTAGCAGTGTTTCTGCATCACTTCAATTGCCCAATGTTCGGCGTCTTCCTTCACTCTCCACACTAAGTGAACTGGATGACTTATCGATTGCAAGGATTGATGAATCTGATATTGCAGCAGATTCCGTTTTCTCTCAGTTGAAAATTGATGATGCTAGATAG	2523	0.4273	MATLQLHRIQHSLFLVVFLLQFSSLQFPSLGYNFPDRYFINCGSDSDVTESGHRYVGESNPIASFSSNSNTESNQSTVPSPLYQTARIFRSQSWYEFTTDINSTYLLRLHFCAFSSPSNLFTAKFNVSVPGFWLLPNLDARNTTNSALVKEFYMKITRPKFKITFTPLASSFAFVNAIELFVLPLHLMADSVARFTYGNDSKLLSRTLETKHRINVGGQTVTRDNDNLLRDWSPDDSFLTNPRNAKNSSQYNGEIKYHVPDDSDGPNSNQYTAPNAVYQTAKEINNISAIAAADSITWDLPVEKNTDHLVRLHFCDIFNVQSGLTIFILFIYDSYVINVNDDEKLSSQLPNPYFYDFVVHSDDSGFMKISIAPNASVPQPNAFLNGLEIMKLIESSGSAPQDLDDSNSNHSSLPVVLGSALGGLVLVSVVIAGGFLWRRKMRKQKPVENSDWLPIPMTAGGSSHSRLTEGTTQGSPLPNINLGLKIPLLDLQSATKNFDAKQIIGKGGFGNVYKGVLKNGIRVAVKRGEPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERYEMILVYEYMEKGTLRDHLYNTKLPTLSWKQRLQICIDAARGLHYLHKGASGGIIHRDVKSTNILLDENLVAKVADFGLSRTGPLDHQPYVSTGVKGTFGYLDPEYFRSQQLTEKSDVYSFGVVLLEVLCARPAIDPLLPRDQVNLAEWGMLCKDKGILEEIIDPSIKGQIEQNSLRKFSDTVEKCLQEDGSDRPTMGDVLWDLEYVLQLQRGAIHREPHEDSSSSVSASLQLPNVRRLPSLSTLSELDDLSIARIDESDIAADSVFSQLKIDDAR.	841

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g02240	840	Pfam	Protein tyrosine and serine/threonine kinase	501	765	IPR001245	GO:0004672\|GO:0006468
	Seca11g02240	840	Gene3D	Transferase(Phosphotransferase) domain 1	574	792	-	-
	Seca11g02240	840	Pfam	Malectin-like domain	40	391	IPR024788	-
	Seca11g02240	840	FunFam	Putative receptor-like protein kinase	206	393	-	-
	Seca11g02240	840	SUPERFAMILY	Protein kinase-like (PK-like)	480	770	IPR011009	-
	Seca11g02240	840	Gene3D	-	37	182	-	-
	Seca11g02240	840	Gene3D	-	207	393	-	-
	Seca11g02240	840	MobiDBLite	consensus disorder prediction	451	472	-	-
	Seca11g02240	840	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	618	630	IPR008271	GO:0004672\|GO:0006468
	Seca11g02240	840	ProSiteProfiles	Protein kinase domain profile.	498	771	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g02240	840	ProSitePatterns	Protein kinases ATP-binding region signature.	504	526	IPR017441	GO:0005524
	Seca11g02240	840	Gene3D	Phosphorylase Kinase; domain 1	464	573	-	-
	Seca11g02240	840	FunFam	receptor-like protein kinase FERONIA	463	573	-	-
	Seca11g02240	840	MobiDBLite	consensus disorder prediction	241	269	-	-
	Seca11g02240	840	FunFam	Receptor-like protein kinase FERONIA	574	790	-	-
	Seca11g02240	840	CDD	STKc_IRAK	504	769	-	-
	Seca11g02240	840	PANTHER	OS07G0166700 PROTEIN	485	775	IPR045272	GO:0004714\|GO:0006468
	Seca11g02240	840	SMART	serkin_6	498	771	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g02240	Seca-Chr11	31465023	31467566	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g02240	12	840	Receptor kinase-like Gene Family	AT2G23200	46.316	0.0	677

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca11g02240		Malectin_like	8.6e-27	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g02240	-		-	gmx:100789555	1104.35