LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g02239	ATGTTTATGATGGAACTAGCTGCTAAAGTAAATATGCGTACATTTAGATTTGTGCTGCTGGATGAAATGATAGACAATGGCTTCCCTCTAATTACAGAACCTAATATCCTGCAAGAGATGATTGCTCCACCAAATATTGTTAGCAAAGCCTTGAGTGTTGTGACTGGCAGCAGTTCAAATGTGAGTAATACCCTTCCTGGGGCTACAACATCTTGTGTTCCCTGGAGAACAGCAGAGCCAAAGTACTCCAACAATGAAGCTTATGTAGACCTTGTTGAAGAAATGGATGCAATTATAAACAGGTCCAGGCTCAAAACAGAATTAGATAAAATTGCTGCCTCACAAGCTCGTCTTAGAATTCCAAACCCCATGGTTTTTTATCAAATTGAGCTAGAGTTAGGAATGGTAAAAAATTCTAACCAAGAAAGGTCTATGCCTAAACCCAATGAGGTAAAAAATGAGTCTTCACATGAGTCTTTGTGTGACACAAGTAAAAACTTGAGGCACTCTCTTCTGATTCAGCGTATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTCCCATAACAATCGACTTTACTCCTCTCTCTATACTAACGTTTTACTTATTGGAATGACTAAGAGAAACATGCTTGATGAAGCTCTCTTGAGATTGAAGGTTGCAAGGCATTTGTATGATAAGGAAGCTAGAAGGCAATTGGAAGCATTAGGGATAACAAGGAAGCTAGGAGAGGAATTGAATTGCAATGGGAGTGAGTGCTACAAAATGGCTTTCATTATAATTACTGTTGTTACCATGTTTGGGGCACTTGTGTCTCTCATTTTGGTGCAAATGGCTGTGACTCAGAACAAGATTGAACCTGCTACAAATGAAGGATAG	897	0.3913	MFMMELAAKVNMRTFRFVLLDEMIDNGFPLITEPNILQEMIAPPNIVSKALSVVTGSSSNVSNTLPGATTSCVPWRTAEPKYSNNEAYVDLVEEMDAIINRSRLKTELDKIAASQARLRIPNPMVFYQIELELGMVKNSNQERSMPKPNEVKNESSHESLCDTSKNLRHSLLIQRIIPEIRNYFVKALTKANSHNNRLYSSLYTNVLLIGMTKRNMLDEALLRLKVARHLYDKEARRQLEALGITRKLGEELNCNGSECYKMAFIIITVVTMFGALVSLILVQMAVTQNKIEPATNEG.	299

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g02239	298	MobiDBLite	consensus disorder prediction	140	159	-	-
	Seca11g02239	298	Gene3D	Mu homology domain, subdomain B	73	102	-	-
	Seca11g02239	298	SUPERFAMILY	SNARE-like	18	48	IPR011012	-
	Seca11g02239	298	Gene3D	-	9	49	-	-
	Seca11g02239	298	PANTHER	AP COMPLEX SUBUNIT MU	17	102	-	-
	Seca11g02239	298	SUPERFAMILY	Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	73	102	IPR036168	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g02239	Seca-Chr11	31455650	31461731	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g02239	217	282	Nodulin-like Gene Family	AT2G39210	53.030	6.70e-17	79.0

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g02239	K12398		-	tcc:18600602	147.517

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