Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02236 ATGGCAACTCTTCAGCTCTACAGAATTCTACACTCTCTGTTTTCACTTGCTTTTCTTCTTCAATTTTCATCACTACAGTTTCCTTCACTAGGGTACAACTTCCCAGACAAGTATTTCATCAATTGTGGTTCAGACAGTGATGTAACCGAAAGTGGCCACCATTACATTGGGGAATCAAACCCAGTTTACCCTAAAACCAGTTTTAACAGCACTAATACAGAAAGCAACCAGTCATCAGTGCCTTCAACTCTGTATCAAACAGCAAGGATTTTTCAAAGTCCATCTTGGTATGATTTCAGCACTGAAATAAATCGCACAACTAACCTTTCCACAGCTAGTTTCAACGTTTCTATTCCTGGGTTCATGTTGTTGCCAAATTTCGATGCTAGAAATACTACCAATTCTGCTTCAGTAAAAGAGTTTTTCATTAATACCACTCGCAACAGTTTAAAAATCACTTTTACACCTCTAGCTTCATCATTCGCATTTGTTAACGCCATAGAATTGTTCATACTCCCACTCCATTTTATCTCTGATCGCGTCTTCCGTTACACATTGTCACAAGGGGAAATAGTTTGTTTATTGAGAAATTGGTTTCCTGATGATAGTTATCTCATTAATCCTTGGAATGCGAAGAATAGTTCATCGTATAACCGTCAAATTAAGTACTATGCAGATGATGACTCTTATGGTCCAAACTCGAGTAAGTATATTGCCCCAAATGCTATCTATCAAACTGCCAAAGAGATAAAATATGGCTCTCTAGATTTAGACATACGTTGGCATCTTCCTGTGGACAAGAACACAGATCACCTTGTTCGTCTTCACTTCTGTGACATTTTTAATCAAAAGCGAGGTCTTACAGTTATCCATCTCTTCATTGATGAACACTATGTTATGAATGTAAATAATGACAATGATGTGGCAAACCAGTTTCCTGCTCCTTATTATTATGATTTTGTGGTTCACTCTGATGACTCTGGCTTCATGAAGATCAGCGTAGCACCTAATAGATTTGATCCTAGACTAAATGCGTTTTTAAATGGGATAGAGATAATGAAAGTGATTGAATCATCAAGTTTTGTTCCCCTGGACCTGGATGAATCTAAGCATAGTCGTGTTCCTGTAGTGCTGGGTTCAGTTCTTGGAGGTTTAGTGCTTGTTTCTGTTGTGTTAGTTGGATTTCTTTGGCTTCTTAAATACAGGAGATTGACCGAGGGAACTAGTCAAGGCTCCTATCTCTCCAGCATAAATCTTGGGCTGAAAATCTCCTTGATTGATCTTCAACTGGCAACAGGGAATTTTGATGAAAAGCAGATAATTGGCAAGGGTGGTTTTGGCAATGTCTATAAGGGGGTTCTCAAGAATTGTGTGACAGTGGCTGTGAAAAGAGGTGAGCCAGGGTCAAGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCCAAGATTCGTCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAAAGGTATGAGATGATTCTGGTTTATGAGTACATGGAGAAAGGGACACTCAAAGACCATTTGTACAACACAAAATTACCAACCTTGTCTTGGAAGCAGAGGCTTCAAATTAGCATTGATGCTGCTAGAGGTCTTCATTACCTTCACAAAGGGGTAGCTGGGGGAATCATTCACCGTGATGTAAAATCAACCAACATATTGCTTGATGAGAACCTTGTGGCTAAAGTTGCTGACTTTGGCATTTCAAAGACAGGTTCTCTTGATCATCAACCACATGTCAGCACAGATGTTAAAGGCACTTTTGGGTACCTTGATCCCGAATATTTTATGACGCTACAGCTGACAGAAAAATCTTATGTGTATTCATTTGGGGTAGTTCTTCTTGAAGTTTTATGTGCAAGACCAGCAATTGACCCGTCACTTCCATGGGAAATGGTGAACTTGGCAGAATGGGGAAAGCTTTGCAAAAGCAAGGGGGTACTTGATGAGATCATTGATCCTTCTATCAAGGGACAAATAGATCAAAACTCACTCAGAAAATTCAGTGAGACGGTCGAAAAATGCTTACAAGAAGATGGTTCTGATAGGCCAACAATGGGTGATGTGTTGTGGGACTTGGAGTATGCGCTGCAGCTTCAGCTTCAGCAAGGTGCAGTGCAGAGAGAGCCGCATACGGATAGTTCTAGCAGTGCTTATGCTTCACTTCAATTGCCCAATGTTCCGCGTCTTCCTTCTTTCTCTGTACTAAGTGAAGTAGATGATTTGTCGATTGTGAGGGGTGATGAATCTGATAGTTCAGCACTGCTTTCTCTAAGTTGA 2316 0.4028 MATLQLYRILHSLFSLAFLLQFSSLQFPSLGYNFPDKYFINCGSDSDVTESGHHYIGESNPVYPKTSFNSTNTESNQSSVPSTLYQTARIFQSPSWYDFSTEINRTTNLSTASFNVSIPGFMLLPNFDARNTTNSASVKEFFINTTRNSLKITFTPLASSFAFVNAIELFILPLHFISDRVFRYTLSQGEIVCLLRNWFPDDSYLINPWNAKNSSSYNRQIKYYADDDSYGPNSSKYIAPNAIYQTAKEIKYGSLDLDIRWHLPVDKNTDHLVRLHFCDIFNQKRGLTVIHLFIDEHYVMNVNNDNDVANQFPAPYYYDFVVHSDDSGFMKISVAPNRFDPRLNAFLNGIEIMKVIESSSFVPLDLDESKHSRVPVVLGSVLGGLVLVSVVLVGFLWLLKYRRLTEGTSQGSYLSSINLGLKISLIDLQLATGNFDEKQIIGKGGFGNVYKGVLKNCVTVAVKRGEPGSSQGLPEFQTEIMVLSKIRHKHLVSLIGYCDERYEMILVYEYMEKGTLKDHLYNTKLPTLSWKQRLQISIDAARGLHYLHKGVAGGIIHRDVKSTNILLDENLVAKVADFGISKTGSLDHQPHVSTDVKGTFGYLDPEYFMTLQLTEKSYVYSFGVVLLEVLCARPAIDPSLPWEMVNLAEWGKLCKSKGVLDEIIDPSIKGQIDQNSLRKFSETVEKCLQEDGSDRPTMGDVLWDLEYALQLQLQQGAVQREPHTDSSSSAYASLQLPNVPRLPSFSVLSEVDDLSIVRGDESDSSALLSLS. 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02236 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Seca11g02236 771 Gene3D - 37 171 - -
Seca11g02236 771 Gene3D - 192 356 - -
Seca11g02236 771 Pfam Malectin-like domain 40 355 IPR024788 -
Seca11g02236 771 CDD STKc_IRAK 441 706 - -
Seca11g02236 771 Gene3D Transferase(Phosphotransferase) domain 1 511 729 - -
Seca11g02236 771 FunFam Receptor-like protein kinase FERONIA 511 729 - -
Seca11g02236 771 Gene3D Phosphorylase Kinase; domain 1 401 510 - -
Seca11g02236 771 SMART serkin_6 435 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02236 771 FunFam receptor-like protein kinase FERONIA 401 510 - -
Seca11g02236 771 ProSiteProfiles Protein kinase domain profile. 435 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02236 771 ProSitePatterns Protein kinases ATP-binding region signature. 441 463 IPR017441 GO:0005524
Seca11g02236 771 SUPERFAMILY Protein kinase-like (PK-like) 413 706 IPR011009 -
Seca11g02236 771 PANTHER OS07G0166700 PROTEIN 422 712 IPR045272 GO:0004714|GO:0006468
Seca11g02236 771 Pfam Protein tyrosine and serine/threonine kinase 438 702 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02236 Seca-Chr11 31430319 31432767 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02236 32 762 Receptor kinase-like Gene Family AT2G23200 42.409 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca11g02236 Malectin_like 3.9e-19 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02236 - - gmx:100789555 877.085