LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g02235	ATGGCAACTCTTCAGCTCTACAGAATTCTACGCTCTTTGTATTTACTTGTTTTTCTTCTTCAATTCTCATCACTCCAGTTTCCCTCACTCGGGTACAATTTCCCAGATAAGTATTTCATCAATTGTGGTTCCGATAGTAATGTAACTGAGAGTGGCCACCGTTATGTTGGGGAATCAAACCCTATAGCAAGTTTCAGCAGCAACAGCAATAAAGAAAGCAATCAATCAACAGTGCCTTCACCTCTGTACCAAACAGCAAGAATTTTTCGAAGTCAATCTTGGTATGAGTTCACTACTGATATCAATAGCACCTATCTGCTACGCCTCCATTTCTGTGCTTTCTCTTCGCCGAGTAATCTTTTCACAGCTAAGTTCAACGTTTCAGTTCCTGGCTTCTGGCTTTTGCCAAATTTGGATGCCAGAAATACTACTAACTCTGCTTTAGTGAAAGAGTTCTACATGAAAATCACTCGCCCCAAATTCAAAATCACTTTCACACCTCTAGCATCATCATTCGCGTTTGTAAATGCTATAGAACTCTTTGTCCTCCCCCTCCATTTGATGGCCGATTCAGTCGCACGTTTCACTTATGGCAATGATAGGCAGAATCTACCTTACAACGGCAAATTACTCTCTCGGACATTGGAAACCAAACATAGGATCAACGTTGGTGGCCAAACAGTGACAAGGGACAACGATAACTTATTGAGAGACTGGTCTCCTGATGATAGTTTTCTCACTAATCCGAGAAACGCGAAGAATAGTTCCCAGTACAATGGTGAAAACTCTGACGGTCCAAATTCAAATCAATATACTGCCCCAAATGCTGTCTACCAAACTGCTAAAGAGATTAATAACATCTCTGCCATTGCTGCTGCAGACTCCATAACTTGGGATCTTCCCGTGGAGAAGAACACAGATCATCTCGTTCGGCTTCACTTTTGTGACATTTTTAATGTACAGAGTGGTCTTACAATCTTTATACTGTTCATTTACGACAGTTATGTTATCAATGTTAACGATTTTGACAAGGACCTTTCCAACAAGTTGCCTAATCCTTATTATTATGATTTTGTGGTTCAATCTGACGACTCTGGGTTCATGAGGATCAGTATAGCACCTAATGCATCTGTTCCTCAACCAAATGCGTTTTTAAACGGACTAGAAATAATGAAACTGATTGAATCATCAGGTTCTGCTCCCCAGGACCTGGATGACTCCAACTCCAACCATAGTAGTCTTCCCGTGGTGCTGGGTTCAGCTCTTGGAGGTTTAGTTCTGGTTTCTGTTGTGATAGCTGGTGGGTTTCTTTGGCGTCGTAAGATGAGGAAACAAAAGCCAGTTGAGAATTCTGATTGGTTGCCAATTCCCATGACTGCTGGAGGGAGTTCTCACAGCAGATTGACTGAGGGAACCACCATAAATCTTGGCCTAAAAATCCCCTTGCTTGATCTTCAATCGGCAACCAAGAACTTTGATGCAAAGCAGATAATTGGCAAGGGTGGTTTTGGAAATGTCTATAAGGGGGTTCTGAAGAATGGCATAAGAGTGGCTGTGAAAAGAGGTGAGCCAGGGTCAGGTCAAGGCCTTCCAGAATTTCAGACAGAGATCATGGTTTTGTCCAAGATTCGTCACAGGCACCTTGTTTCCTTAATTGGGTATTGCGATGAAAGGAATGAGATGATACTGGTTTATGAGTACATGGAGAGAGGAACACTTAGAGACCATTTGTACAATACAAATTTGCCAAGCTTGTCTTGGAAACAGAGGCTTGAAATTTGCATTGGAGCTGCCAGAGGTCTTCATTACCTTCACAAAGGAGTAGCTGGTGGAATCATTCACCGTGATGTGAAATCAACCAACATATTGCTTGATGAGAACCTTGTGGCTAAAGTTGCTGACTTTGGCCTCTCAAGGACAGGTCCTGATAATCATCAACCATATGTCAGCACAGTTGTTAAAGGCACTTTTGGGTACCTTGATCCTGAGTATTTTAGGTTGGAACAGCTGACAGAAAAATCTGATGTGTACTCATTTGGGGTAGTTCTTCTGGAAGTGTTATGTGCAAGACCAGTCATTGACCAGTCGCTTCCTAGGGAGCTGGTCAACTTGGTTGAGTGGGGAATGCTTTGCAAAAGCAAGGGAATACTCGATGGGATCATTGATCCTACCATCAAGGGCCAAATAAATCAAAACTCACTCAGAAAATTTAGTGAGGCAGTAGAAAAATGCTTACAAGAATATGGTTCTGATAGGCCTACAATGAGTGATGTGTTGTGGGACTTGGAGTATGCGCTGCAGCTTCAGCAAGGTGCAGTACACGGAGAGCAACATGAGGATAGTTCTAGCAGTGCCTCTGCTTCACTTCAATTGCCCAATGTTCGGATTCTTCCTCCATTCCCTACACTGAGTGAAGTGGATGACATGTCAATTATGAGGGGCGATGATTGA	2451	0.4264	MATLQLYRILRSLYLLVFLLQFSSLQFPSLGYNFPDKYFINCGSDSNVTESGHRYVGESNPIASFSSNSNKESNQSTVPSPLYQTARIFRSQSWYEFTTDINSTYLLRLHFCAFSSPSNLFTAKFNVSVPGFWLLPNLDARNTTNSALVKEFYMKITRPKFKITFTPLASSFAFVNAIELFVLPLHLMADSVARFTYGNDRQNLPYNGKLLSRTLETKHRINVGGQTVTRDNDNLLRDWSPDDSFLTNPRNAKNSSQYNGENSDGPNSNQYTAPNAVYQTAKEINNISAIAAADSITWDLPVEKNTDHLVRLHFCDIFNVQSGLTIFILFIYDSYVINVNDFDKDLSNKLPNPYYYDFVVQSDDSGFMRISIAPNASVPQPNAFLNGLEIMKLIESSGSAPQDLDDSNSNHSSLPVVLGSALGGLVLVSVVIAGGFLWRRKMRKQKPVENSDWLPIPMTAGGSSHSRLTEGTTINLGLKIPLLDLQSATKNFDAKQIIGKGGFGNVYKGVLKNGIRVAVKRGEPGSGQGLPEFQTEIMVLSKIRHRHLVSLIGYCDERNEMILVYEYMERGTLRDHLYNTNLPSLSWKQRLEICIGAARGLHYLHKGVAGGIIHRDVKSTNILLDENLVAKVADFGLSRTGPDNHQPYVSTVVKGTFGYLDPEYFRLEQLTEKSDVYSFGVVLLEVLCARPVIDQSLPRELVNLVEWGMLCKSKGILDGIIDPTIKGQINQNSLRKFSEAVEKCLQEYGSDRPTMSDVLWDLEYALQLQQGAVHGEQHEDSSSSASASLQLPNVRILPPFPTLSEVDDMSIMRGDD.	817

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g02235	816	Pfam	Malectin-like domain	40	392	IPR024788	-
	Seca11g02235	816	FunFam	receptor-like protein kinase FERONIA	458	567	-	-
	Seca11g02235	816	Gene3D	-	37	182	-	-
	Seca11g02235	816	Gene3D	-	214	394	-	-
	Seca11g02235	816	PANTHER	OS07G0166700 PROTEIN	479	769	IPR045272	GO:0004714\|GO:0006468
	Seca11g02235	816	SUPERFAMILY	Protein kinase-like (PK-like)	474	763	IPR011009	-
	Seca11g02235	816	Gene3D	Phosphorylase Kinase; domain 1	461	567	-	-
	Seca11g02235	816	SMART	serkin_6	492	765	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g02235	816	MobiDBLite	consensus disorder prediction	243	272	-	-
	Seca11g02235	816	MobiDBLite	consensus disorder prediction	244	272	-	-
	Seca11g02235	816	FunFam	Receptor-like protein kinase FERONIA	568	784	-	-
	Seca11g02235	816	CDD	STKc_IRAK	498	763	-	-
	Seca11g02235	816	FunFam	Putative receptor-like protein kinase	213	394	-	-
	Seca11g02235	816	Gene3D	Transferase(Phosphotransferase) domain 1	568	788	-	-
	Seca11g02235	816	ProSiteProfiles	Protein kinase domain profile.	492	765	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g02235	816	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	612	624	IPR008271	GO:0004672\|GO:0006468
	Seca11g02235	816	ProSitePatterns	Protein kinases ATP-binding region signature.	498	520	IPR017441	GO:0005524
	Seca11g02235	816	Pfam	Protein tyrosine and serine/threonine kinase	495	759	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g02235	Seca-Chr11	31364539	31367031	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g02235	32	802	Receptor kinase-like Gene Family	AT2G23200	46.106	0.0	646

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca11g02235		Malectin_like	7.8e-29	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g02235	-		-	gmx:100789555	1041.18