Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02223 ATGACCTTCATCAAGGAAGGGGAAGTTGATGATCAAGTTCATGTGTCAATCAACAATAAACAAGATGTAGATGGTGGATCACATATCATGACCAACTATGAAATTGTGATCCCTGATGAGGATGATAACTTGGGAGAATGGTTGAGTTTAGGCCTCAAAGGAGACATGTCTCTGGAAGCAGCTGATCAAAACCAAGATAACAATTATTCCCAATCAAAACCTCTCCATAACAAGGTATTCTCATGCAACTTCTGCATGAGAAAGTTTTACAGTTCACAGGCTTTGGGTGGTCATCAGAATGCACACAAAAGGGAAAGAGAAGCAGCTAGAAGTTACCAATCTCATAGAATGATGACTGCATCAATGGGACTTGCTTACTCTTCTTTGGCAGCAAGATCACTGGGAATCCAGCCACACTCACTTGTGCACAAGCCAAGCAGAGACAAGTCTGCTATGGTAGCTAGATTCAATAATAATGATGCAAATTCTGGGATTAGAATGGCATGGACACCCTTTATGCTTGAACAAGCTATGGATTTCATTTGGCCAGGAAGCTTTCGAATGGAGTTGTCAAAGCAAGAAGCAGATATAAATAAGCTTGACTTAGATCTTCGGCTCTGA 621 0.4106 MTFIKEGEVDDQVHVSINNKQDVDGGSHIMTNYEIVIPDEDDNLGEWLSLGLKGDMSLEAADQNQDNNYSQSKPLHNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSHRMMTASMGLAYSSLAARSLGIQPHSLVHKPSRDKSAMVARFNNNDANSGIRMAWTPFMLEQAMDFIWPGSFRMELSKQEADINKLDLDLRL. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02223 206 SUPERFAMILY beta-beta-alpha zinc fingers 76 107 IPR036236 -
Seca11g02223 206 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Seca11g02223 206 Gene3D Classic Zinc Finger 60 128 - -
Seca11g02223 206 PANTHER ZINC FINGER PROTEIN 4-LIKE 35 206 - -
Seca11g02223 206 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02223 Seca-Chr11 31225029 31225649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02223 56 197 C2H2 Transcription Factor Family AT1G24625 38.356 2.44e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02223 - - ccaj:109809498 280.796