LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g02189	ATGAAGCAGAAGAAGAGTACTTACATAGTCCATGTGGCCAAATCTGAAATGCCAGAGAGCTTCGAGCACCACACGGCGTGGTACGAATCGTCTCTACAATCCATATCTGACTCAGCCGAAATGCTCTACACCTACGACAACGCGATCCACGGATTCTCCACCAGATTAACAGCGGAAGAAGCTCGTTTGCTGGAGAGCCAAACAGGGATTCTAGCGGTGTTGCCTGAGATGAGGTACGAGCTTCACACAACTAGGACCCCTCTGTTCCTTGGCCTCGACAAGAGCGCAGACATGTTCCCCGAATCAAGCTCAGGGAGCGAGGTTATCGTTGGGGTTCTGGACACTGGTGTTTGGCCTGAAAGCAAGAGCTTCGACGACACTGGATTTGGACCCATCCCTACCAGCTGGAAAGGCGAGTGTGAAACGGGAACCAATTTCACAGCATCAAACTGCAACAAGAAGTTGATTGGGGCAAGAAGTATCGAGTCTAAATCTCCGCGTGATGACGATGGCCACGGCACCCACACGGCGAGCACAGCCGCAGGTTCGGTGGTTTCAGGGGCGAGTCTATTCGGCTACGCTCCGGGGACGGCGCGTGGGATGGCCACGCGCGCCAGAGTAGCTGCATACAAGGTTTGCTGGAAGGGAGGCTGTTTCAGCTCCGACATTTTGGCAGCGATTGACAAAGCCATTGAGGACAGCGTCAATGTCCTTTCTCTATCCCTCGGTGGTGGAATGGCCGATTATTACAGAGACAGTGTTGCCATTGGAGCTTTTGCGGCAATGGAGAAAGGTATACTTGTCTCTTGCTCCGCTGGGAACGCGGGTCCAAGTTCCTACAGTCTCTCCAATGTGGCGCCATGGATAACCACCGTGGGGGCTGGCACACTGGATCGTGACTTCCCGGCGTACGTTAGCCTCGGAAATGGACTTAACTACTCTGGCGTGTCGCTCTATCGAGGAAACGCTTTGCCAGATTCTCCCTTGCCGTTTATATACGCAGGGAATGCCAGCAACACTACGAATGGTAACTTGTGCATGATGGGGACCTTGTCGCCGGAGAAAGTCGCCGGGAAGATCGTGCTGTGTGACCGTGGAATGAGTGCGAGGGTGCAGAAAGCGTTGGGCATGGTGTTGAGTAACACCGCCGCTAACGGTGAAGAACTGGTGGCTGACGCTCATCTTTTGCCGGCGTCGGCGGTGGGTGAAAAAGCCGGGGATGCTATCAAGAAGTACTTGTTTACCGACCCGAAACCAACGGTGAAGATTATGTTCGAGGGAACGAAGGTGGGGATTCAGCCATCACCGGTAGTTGCGGCGTTTAGCTCCCGGGGCCCTAATTCCATCACGCCGCAGATCCTGAAGCCTGATCTAATCGCGCCAGGTGTCAACATCTTAGCGGGGTGGTCAAAGAAAGTGGGTCCCACTGGGTTGTCAGTAGATGAAAGGCGCGTGGATTTTAACATCATATCAGGCACGTCTATGTCCTGCCCTCACGTGAGCGGTCTAGCCGCTTTGATCAAGTCGGCTCACCCGGACTGGAGCCCAGCCGCGATTCGATCGGCTCTCATGACCACGGCTTATACGGCTTACAAGAACGGTGTAAAATTGCAGTCGACGCCGTTCGATCATGGTGCTGGACACGTGGACCCCGTTGCTGCCCTTAATCCTGGACTGGTCTATGATCTGACGGCAGATGATTATCTTGGTTTCCTTTGCGCGCTAAACTACACAGCCTCTGAGATCACGAGCGTGGCTAGGAGAAAATTCCAGTGTGACGCAAGCAAAAAATACAGTGTGACCGACCTTAATTACCCTTCGTTTGCGGTGGTCTATGAATCCGGATCCAATGTAGTTAAACACACGCGGACTCTCACTAACGTGGGACCCGCAGGAACCTACAAAGCTTCTGTGACGTCAGATATTCCATCTGTGAAAATCTCGGTTGAGCCGCAAGTGTTGAGTTTCAAGGAAAATGAGAAAAAATCTTTCACAGTCACGTTTACGTCCTCGGGTTCGACTCCGCAGAGGGTGAGTGGTTTTGGAAGGTTAGAATGGTCTGATGGGAAGCACGTGGTTGGAACCCCGATCTCGATTAGCTGGGAGTGA	2109	0.5306	MKQKKSTYIVHVAKSEMPESFEHHTAWYESSLQSISDSAEMLYTYDNAIHGFSTRLTAEEARLLESQTGILAVLPEMRYELHTTRTPLFLGLDKSADMFPESSSGSEVIVGVLDTGVWPESKSFDDTGFGPIPTSWKGECETGTNFTASNCNKKLIGARSIESKSPRDDDGHGTHTASTAAGSVVSGASLFGYAPGTARGMATRARVAAYKVCWKGGCFSSDILAAIDKAIEDSVNVLSLSLGGGMADYYRDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAYVSLGNGLNYSGVSLYRGNALPDSPLPFIYAGNASNTTNGNLCMMGTLSPEKVAGKIVLCDRGMSARVQKALGMVLSNTAANGEELVADAHLLPASAVGEKAGDAIKKYLFTDPKPTVKIMFEGTKVGIQPSPVVAAFSSRGPNSITPQILKPDLIAPGVNILAGWSKKVGPTGLSVDERRVDFNIISGTSMSCPHVSGLAALIKSAHPDWSPAAIRSALMTTAYTAYKNGVKLQSTPFDHGAGHVDPVAALNPGLVYDLTADDYLGFLCALNYTASEITSVARRKFQCDASKKYSVTDLNYPSFAVVYESGSNVVKHTRTLTNVGPAGTYKASVTSDIPSVKISVEPQVLSFKENEKKSFTVTFTSSGSTPQRVSGFGRLEWSDGKHVVGTPISISWE.	703

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g02189	702	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	1	82	IPR037045	-
	Seca11g02189	702	Pfam	Fibronectin type-III domain	602	699	IPR041469	-
	Seca11g02189	702	FunFam	subtilisin-like protease SBT1.5	298	430	-	-
	Seca11g02189	702	SUPERFAMILY	Subtilisin-like	81	559	IPR036852	GO:0004252\|GO:0006508
	Seca11g02189	702	PRINTS	Subtilisin serine protease family (S8) signature	491	507	IPR015500	-
	Seca11g02189	702	PRINTS	Subtilisin serine protease family (S8) signature	105	124	IPR015500	-
	Seca11g02189	702	PRINTS	Subtilisin serine protease family (S8) signature	168	181	IPR015500	-
	Seca11g02189	702	FunFam	Subtilisin-like protease SBT1.5	107	309	-	-
	Seca11g02189	702	FunFam	Subtilisin-like protease SBT1.9	1	82	-	-
	Seca11g02189	702	Gene3D	Peptidase S8/S53 domain	108	568	IPR036852	GO:0004252\|GO:0006508

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g02189	Seca-Chr11	30312564	30314762	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g02189	5	701	Subtilisin-like Serine Gene Family	AT5G67360	72.840	0.0	1072

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g02189	-		-	gmx:100815413	1190.25

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