Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02184 ATGCGCCGGCGTAGCCCCTCCGTTGCTCACAACGCACCGCAGATTTCTGCTCACAGTTTCTCTGCTGCGAGGGTTAGGGTTTCCTTCTCTGTTCATTTTCTCTTTGTCTTATCTCAAAAAGAAGAAGCACTTCATTTCCGGTCAAGAGAGAAAACTGTGAGCACCATTGGTCGTTTAGTGCTAATCATATGGCTGTTTGTGGTTTTGACACTCAACTCAAGCTATATTGTAAGCCTGACATCCATCCTTACTGTGGAACAACTCTCTTACCCAGTTAAGGGAATTGAAAGCTTAGTAATAAGCAACGACCGCATTGGTTACCTGAGGGGTTCATTTGCTGAAAATTATCTGACTGAGGAGCTCAACATACACAGATCCAGACTTGTTTCATTAAATAAATGGCCAATAGACCACGGTGTTCTCTGCCGTAGTCTCAAGAGTCATGACTATGGGATGTGCTGTCAATAA 468 0.4402 MRRRSPSVAHNAPQISAHSFSAARVRVSFSVHFLFVLSQKEEALHFRSREKTVSTIGRLVLIIWLFVVLTLNSSYIVSLTSILTVEQLSYPVKGIESLVISNDRIGYLRGSFAENYLTEELNIHRSRLVSLNKWPIDHGVLCRSLKSHDYGMCCQ. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02184 155 Gene3D - 1 127 - -
Seca11g02184 155 Pfam Ligand-gated ion channel 19 102 IPR001320 GO:0015276|GO:0016020
Seca11g02184 155 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 27 129 IPR015683 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02184 Seca-Chr11 30264634 30267653 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02184 44 132 Ion Channels AT1G42540 69.663 5.42e-32 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02184 K05387 - gmx:100789442 150.599