Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02180 ATGTGTAATTATCGCTGCACACGCCTTAAATATGCGCACGAGCCACCAGCACTACTCCTCCGCTTCTTGCTAGTGTGCACCCTTGTCGCCTTGCGTGCGCCGGTTGCGCAACCCCCTAACCTGCGCATCCCTACCCACCCAAGCGAAACCAACACCACCACTATCCTCCACCATACTCACAGAGCCCAGATCTCAAGCTCCAATCGCCAAGGCATGTCGAAGGCGCGTGTCTACACCGATGTCAACGTTCTTCGCCCCAAAGAGTACTGGGACTACGAGGCTCTCACCGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGCAAAGTGGGAAGGGGAAAGTATAGTGAGGTTTTTGAAGGCATAAATGTCAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATTAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGGGGCCCAAATATTGTCAAGCTTCTTGATATTGTCAGAGATCAACATTCTAAAACTCCAAGCTTAATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTTCTTAAGAATGCTTTTGGTTTTGAATTGCAGGCCTTAGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTCAAGCCCCATAATGTTATGATAGATCATGAATTACGGAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTACCATCCTGGAAAGGAGTATAATGTTCGTGTGGCTTCAAGATACTTCAAGGGCCCTGAACTTCTAGTTGATTTGCAAGACTATGACTACTCATTAGACATGTGGAGCCTGGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTTTATGGTCACGACAACCACGATCAGCTTGTAAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAATGCGTATCTGAATAAGTATCACCTGGAGCTTGATCCACAACTTGATGCACTAGTTGGAAGGCACAGTCGCAAGCCTTGGTCTAAATTTATCAATCCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGACTTTCTTGATAAGCTCCTGCGATATGACCACCAGGACAGGCTAACGGCAAGAGAAGCAATGGCGCATCCATATTTCTCTCAGGTAAGGGCAGCAGAAAGTAGCAGAATGAGGACACAGTAA 1239 0.4415 MCNYRCTRLKYAHEPPALLLRFLLVCTLVALRAPVAQPPNLRIPTHPSETNTTTILHHTHRAQISSSNRQGMSKARVYTDVNVLRPKEYWDYEALTVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKNAFGFELQALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINPDNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQ. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02180 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Seca11g02180 412 CDD STKc_CK2_alpha 86 398 IPR045216 GO:0004674|GO:0006468
Seca11g02180 412 ProSiteProfiles Protein kinase domain profile. 105 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02180 412 FunFam Casein kinase II subunit alpha 182 401 - -
Seca11g02180 412 SUPERFAMILY Protein kinase-like (PK-like) 76 402 IPR011009 -
Seca11g02180 412 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Seca11g02180 412 SMART serkin_6 105 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02180 412 Pfam Protein kinase domain 105 398 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02180 412 PANTHER CASEIN KINASE II SUBUNIT ALPHA 63 408 IPR045216 GO:0004674|GO:0006468
Seca11g02180 412 Gene3D Transferase(Phosphotransferase) domain 1 182 398 - -
Seca11g02180 412 Gene3D Phosphorylase Kinase; domain 1 105 181 - -
Seca11g02180 412 FunFam Casein kinase II subunit alpha 91 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02180 Seca-Chr11 30183173 30189860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02180 103 398 Core Cell Cycle Gene Families AT1G76540 28.707 2.65e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca11g02180 Pkinase 9.8e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02180 K03097 - gmx:100819679 734.561