Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02176 ATGGGTGAGGAAGGTGAATTTTTTGGTTATGATGAAAAAGAAGATATTGTTGTATCTCATGATGAGCCTAGTAGGTTGCTTGACTTGTCTGGGGAAGAAATAATGTCCCTTGAATTTGGCAGTGAAGAAGAGGCATATAATTTTTATCAATTATATGCTAAGTTTCATGGCTTTGTGGTTAGAAAAGATGATGTAACGAAGGATATTAGGGGTAATTTAATTATGCGGCAGTTTGTTTGCAATAGGGAGGGACTAAGAAAAAAGAAGCACTTTATGAGGCTTCGTATACACTACCATGTGAAGAGTTTAAAGTGGAAAGTGGTGTCATTTGAGCAATGTCATAACCATGAGCTTACCCCTTCTAGATTTGTGCACCTACACCCTGCTTACCGGGGTTTAACGGATGCTGATAAGGCTCAGGTTGATAGTTTGCATACATATGGTCTTAGAGGTTGTCATATTATGGGGTACCTAGTGGCTCAAAAGGGTTCTTATTGTCGTGTTGGTTTTACGAAGAAGGATATGTACAACTATCTTGACCGAAAAAATCAAGCAAAGGTGAAGAAAGGGGATGTACGTGCTGGCTTGAGTTACCTTCAAGGCAAGGCTAACAGTGACCCACTTTTATATGGGAAATACTCTACTGGATCTGATGGTAAATTAAAATGCCTTTTTTGGGCTGATGGAGTAAGTAGGTATGATTTTCATTGCTTTGGTGATGTTCTTGCGTTTGACACGACATACAAGAAGAACAAGTACAATTATCCTGTTGTAATTTTTTCTGGCTGCAATCATCATTCGCAAACAATTATTTTTGGTTGTGCTTTAGTCTCAGATGAAACAACTGAAACCTATAAGTGGGTTTTAGAAGCTTTCTTGGAAGCAATGGGTAACAAGCAGCCGAATGCAGTAGTAACAGATGGTGATAGTGCAATGCGGGAGGCTATTAAGCATGTTTTTCCAGAATCATGCCATCGCTTGTGTGCATGGCACTTGCATAATAATGCTTGTGAGAATGTCAAATGTTCTCCGTTTTTGGAAGATTTCAAGAGAGCAATGTACTCGAATTTCACCCCGGATGAATTTGAGGAGTTTTGGAAGAAGAAGGTGGTTGAACATGGTCTTGTAGGGAATAAATGGGTGACCAAAACATATGAAAATAAGGGACTGTGGGCGACTGCATATCTTAGGGATAAGTTCTTTGGTCGTATAAGGACAACATCTCAATGTGAATCCATTAATTCTTTTATTAGGTCATATTGTAAGAGGAAAAGTAGTATGGTTGAATTTTTGCACAAGTTTGAGCAGGCAAAGAAGGAGTACAGAAATAATGAGATGATGGCTGAATTTAGGTCTTTATTTTCGGAGCCAGTGCTAACTACATATCTTCGTAGCTTTGAGAAAGAGGCTTCAAAAATCTACACTCAAGAGATTTTCAAAGAATTTAAGCAAGAAATTGAAAAGGCCAATGCATTGATTGTTTGTGAAAGATCAGTGTTGGAGGAGAATGTGATGTTCACTCTTAAAAAGTTCTGCACTCCTGGTAAAGTTGTTCATGTTATGTTTTATACTGCAAACACAAGTTTTATGTGTGACTGTAGGCATTTTGAATCTAGAGGTATTCCATGTTCCCATATTATATCTGTCATGAGAAGTGAGGATATTGATCATATTCCTAATAATTTGATATGCAAACGATGGTTGAAGAATGCTAAGATTGATTTCATGTCCCATTATCAACATGATGAAATGGATTCTGATGTGATGGAAGAAGCTTGTTTTGCTGCAGTAAGTTCTGCTTGTAACAATTTTGCAAAGGTAGCATCAAAAAAGAGAAATTACTTAAAAGAGATATTGGAAGACATTCGCCAGCTAACTATAAAGTATGAAAAGTTAGGGGATAAGGTTTGCACAGATGGTAACCCATCAGCTGAGCATGTTGTCGATCCCAATAGTGTGAAAACCAAAGGTGCACCTAGGAAGAAAAAGGACAACAGGAAGAGGAGAAGGCATTGTTCTAACTGTGGTAGCACAGGACACACAATAAGGAGATGCCCATTAAGATATGGCACAGATCAGAACAGTAAAAGGGATGAAAAACTAGAAAAATCAGAAAGCGGTGCAAATGATAGTGTAAGTGTTTAA 2145 0.3795 MGEEGEFFGYDEKEDIVVSHDEPSRLLDLSGEEIMSLEFGSEEEAYNFYQLYAKFHGFVVRKDDVTKDIRGNLIMRQFVCNREGLRKKKHFMRLRIHYHVKSLKWKVVSFEQCHNHELTPSRFVHLHPAYRGLTDADKAQVDSLHTYGLRGCHIMGYLVAQKGSYCRVGFTKKDMYNYLDRKNQAKVKKGDVRAGLSYLQGKANSDPLLYGKYSTGSDGKLKCLFWADGVSRYDFHCFGDVLAFDTTYKKNKYNYPVVIFSGCNHHSQTIIFGCALVSDETTETYKWVLEAFLEAMGNKQPNAVVTDGDSAMREAIKHVFPESCHRLCAWHLHNNACENVKCSPFLEDFKRAMYSNFTPDEFEEFWKKKVVEHGLVGNKWVTKTYENKGLWATAYLRDKFFGRIRTTSQCESINSFIRSYCKRKSSMVEFLHKFEQAKKEYRNNEMMAEFRSLFSEPVLTTYLRSFEKEASKIYTQEIFKEFKQEIEKANALIVCERSVLEENVMFTLKKFCTPGKVVHVMFYTANTSFMCDCRHFESRGIPCSHIISVMRSEDIDHIPNNLICKRWLKNAKIDFMSHYQHDEMDSDVMEEACFAAVSSACNNFAKVASKKRNYLKEILEDIRQLTIKYEKLGDKVCTDGNPSAEHVVDPNSVKTKGAPRKKKDNRKRRRHCSNCGSTGHTIRRCPLRYGTDQNSKRDEKLEKSESGANDSVSV. 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02176 714 Pfam SWIM zinc finger 531 550 IPR007527 GO:0008270
Seca11g02176 714 MobiDBLite consensus disorder prediction 640 714 - -
Seca11g02176 714 Pfam MULE transposase domain 241 335 IPR018289 -
Seca11g02176 714 PANTHER OS01G0519700 PROTEIN 33 673 - -
Seca11g02176 714 Pfam FAR1 DNA-binding domain 47 119 IPR004330 -
Seca11g02176 714 SUPERFAMILY Retrovirus zinc finger-like domains 660 691 IPR036875 GO:0003676|GO:0008270
Seca11g02176 714 ProSiteProfiles Zinc finger CCHC-type profile. 672 686 IPR001878 GO:0003676|GO:0008270
Seca11g02176 714 ProSiteProfiles Zinc finger SWIM-type profile. 523 554 IPR007527 GO:0008270
Seca11g02176 714 MobiDBLite consensus disorder prediction 659 674 - -
Seca11g02176 714 SMART 26again6 529 556 IPR006564 GO:0008270
Seca11g02176 714 MobiDBLite consensus disorder prediction 690 706 - -
Seca11g02176 714 Coils Coil 615 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02176 Seca-Chr11 30161849 30164047 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g02176 MULE 4.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02176 - - ccaj:109792835 891.723