Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02170 ATGGCGTTTGAATTCTACAATGCTTATGCAGAAAAGAGGGGATTTGCAGGTAGAAAGTGGAACACAGTTAAAAACATACAAGGTGTTGTTAGTCAACAGACATTTGTTTGTTACAAGCAAGGTTATAGGTTGGATAAGCATTTGAAGAGGACTGACCGCAAGAAGGAACCTAGAGCAATGACGAGGTTTGGTTGTGATGCCTTCTTTCGGGTGTGGCTCTTAACAGACACTGGTCGGTGGCATGTTAAAGCTCTTTCTAATGATCACAGTCATGAGATGTTAGCACCACAATTTGTTGGAATGTTTCCTGCACATAGGAAGATGGATGAATGTGAGCTTATGCAGATGAATACAATGAGAGATGCTGGAATTGGTGTGACACAAATTTATGGATTAGTTGTAAATCAGTCAGGGGGTTATGAGAGGTTGGCCTTTAGAAAGCGAGATATGTATAATGAAATTGACAAATAA 471 0.3992 MAFEFYNAYAEKRGFAGRKWNTVKNIQGVVSQQTFVCYKQGYRLDKHLKRTDRKKEPRAMTRFGCDAFFRVWLLTDTGRWHVKALSNDHSHEMLAPQFVGMFPAHRKMDECELMQMNTMRDAGIGVTQIYGLVVNQSGGYERLAFRKRDMYNEIDK. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02170 156 Pfam FAR1 DNA-binding domain 4 94 IPR004330 -
Seca11g02170 156 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 2 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02170 Seca-Chr11 30123112 30123582 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g02170 FAR1 1.1e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02170 - - aip:107607175 161.384