Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02163 ATGACGCAATTCACACCACCACTACCTCCTTTGCACCAAATCACACCTTCTTCCATGAACAAAAATAATCAAATTCCTAGAACTAGGCCATGGCCTACAGGCTTCCCCACATCTAAGGCCCTCAGTAGCTTTGGAGATGCAAACTGCATGGAACAGTTACTTGTTCACTGTGCCAACGCCATAGAAACCAACGATGTAACTCTCGCCCAACAGATCCTTTGGGTCCTTAACAACCTAGCACTCCCAGACGGTGACTCCAACCAACGCCTAGCCTACAGTTTCCTTAGAGCTCTAACCGCTCGAGCAGCCAAGACTGGCAGTTGCAAGATGCTGTTAGAACAAGTTGTTGCAAACACCCCTAACAACCTCACTATTGACACTCACAAATTCTCAATCCTTGAGCTAGCTAATTTCGTTGACTTAACCCCTTGGCACCGTTTCGGCTTCACAGCTGCTAATGCTGCTATTCTAGAAGCTACTGAAGGATTCTCTGTCATCCACATCGTGGACTTAAGCTTGACACATTGCATGCAGATTCCTACACTGATAGACACTATTGCTAACCGTCATGACGTGGCTCCTCTGATCAAACTAACAGTAATAGCTGATGTTGCTATGAGAGAAATTCCACCTATGCTTGATCTTTCCTACGATGAACTCGGTGCTAAATTAGTCAATTTCGCAAGGTCAAGAAACGTGATCATGGAATTTAGAGTGGTTTCTTCAAGTTACACAGATGGTTTCGCTGCTTTGCTTGAAGATTTAAGAGTGCAACGCTTGGTTCACATTGCAGAAGCTGCTACTGCTGAAGCTTTGATTATAAACTGTCACATGATGCTTCATTATATACCTGATGAAACCCTATCTGCAATTCCTGGCACAGACTTAGCCTCTTATGTTTATGATTCTTCTTCTTGCACTGCTTCTGTTACTCCTATCATGTCGCTGAGATCATTGTTCCTTAAAGCCCTGCGGGGTTTAGATCCAACGGCTGTGCTTTTGGTAGATGAGGATGCAGATTTAACATCGAATAACTTGGTTTCGAGACTAAAGTCTGCGTTTAATTATCTATGGATACCTTATGACACTGTGGACACGTTCCTTCCGAGAGGGAGTAAACAAAGGCAGTGGTATGAAGCAGACATTTGCTGGAAGATTGAGAATGTGATAGCACATGAAGGGATTCATAGAGTTGAACGGCTTGAGGCTAAGAGCATGTGGGAGCAACGAATGAGAAGTGCAAACTTCCAAGGGATAGCTTTCAGTGAGGACTCTGTTGGGGAGGTGAAGGCCATGCTGGATGAACATGCTGCTGGATGGGGATTAAAGAAGGATGATGAACATATTGTGCTCACATGGAAAGGCCACAATGTAGTCTTTGCCTCTGCTTGGTTGCCTGCTTGA 1404 0.4459 MTQFTPPLPPLHQITPSSMNKNNQIPRTRPWPTGFPTSKALSSFGDANCMEQLLVHCANAIETNDVTLAQQILWVLNNLALPDGDSNQRLAYSFLRALTARAAKTGSCKMLLEQVVANTPNNLTIDTHKFSILELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDTIANRHDVAPLIKLTVIADVAMREIPPMLDLSYDELGAKLVNFARSRNVIMEFRVVSSSYTDGFAALLEDLRVQRLVHIAEAATAEALIINCHMMLHYIPDETLSAIPGTDLASYVYDSSSCTASVTPIMSLRSLFLKALRGLDPTAVLLVDEDADLTSNNLVSRLKSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGIHRVERLEAKSMWEQRMRSANFQGIAFSEDSVGEVKAMLDEHAAGWGLKKDDEHIVLTWKGHNVVFASAWLPA. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02163 467 Pfam GRAS domain family 50 464 IPR005202 -
Seca11g02163 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 49 454 IPR005202 -
Seca11g02163 467 MobiDBLite consensus disorder prediction 14 33 - -
Seca11g02163 467 MobiDBLite consensus disorder prediction 1 33 - -
Seca11g02163 467 ProSiteProfiles GRAS family profile. 41 465 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02163 Seca-Chr11 29909552 29910955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02163 32 466 GRAS Transcription Factor Family AT3G49950 56.492 1.37e-172 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca11g02163 GRAS 3.7e-88 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02163 - - gmx:100814364 731.48