Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02162 ATGAGTTGCAACGGGTGCCGCGTTCTTCGAAAGGGTTGCAGCGAGTCATGTGTTTTGCGCCCTTGTTTGCAATGGATCGATAGCCCTGAAGCCCAAGGACATGCCACTGTCTTCGTAGCCAAATTCTTTGGCCGCGCAGGCCTCATGTCCTTCATTTCCAACGTCCCTGAAACCCAAAGACCTGCTCTGTTTCAGTCTCTGCTTTTCGAAGCATGTGGAAGAACGGTGAACCCTGTGAACGGCGCCGTGGGGCTTCTCTGGACCGGAAACTGGCACGTGTGCCAGGCGGCGGTGGAGACTGTGCTCCGCGGCGGCACACTCAGGCCCTTGCCGGAGCTTACCGGCCTGGACGCTCCTTCTGCGGCCACCGATGAAGCATCGGAAGTGGAAGTAGCCTGCACGGACATTTGGACGATCCGTGATCCGAATCCAAATTGCCAGCTCACAACCTCGCGATCTAATAATAACAGGATCTCTCCCGGCGGCAAACGCAAGCGGCCGGAGGCGGTGACGGCGATCAATCTCGATCTCCGTCTGACGCCGATTTTCCTGCAGAAAGTGTCGGAGAACCGCCGGCCGGGTTCGCCGTCGATGACTTCGGAGGAATCCGTCACGACGAACACGTGCCTCGGAGATCAGTGGACTCACGGCGGAGACCGGAAAGTTCTCAACCTTTTCATCTGA 684 0.5775 MSCNGCRVLRKGCSESCVLRPCLQWIDSPEAQGHATVFVAKFFGRAGLMSFISNVPETQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPLPELTGLDAPSAATDEASEVEVACTDIWTIRDPNPNCQLTTSRSNNNRISPGGKRKRPEAVTAINLDLRLTPIFLQKVSENRRPGSPSMTSEESVTTNTCLGDQWTHGGDRKVLNLFI. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02162 227 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 213 - -
Seca11g02162 227 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Seca11g02162 227 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02162 Seca-Chr11 29769459 29771132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02162 1 227 AS2 family AT4G37540 57.937 8.10e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca11g02162 LOB 4.6e-26 No_clan