Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02159 ATGGCCATAAGGCCCTTCCAATTCAACTTCTCGCGCGATAGATCGCTCTTTCTATTCCGCACTGCTCAATCTTCTCATTCTCATTCCTTTCTCCGCTCTTGTCAAACTATTGCCCCCTCTTTCTCCTTCCGCCACTTCGCTGTCTCCGCCCCAGCTCCGTCCCTCAGCCGCCCGCCGCCGCCGGACACCATGGCGCAGAAGATTGGAAAATCAACGCGCCGCCCTGGCGCTTCCTCCAAGGCGAGGGTTTATGTCGACGTCAACGTTGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCACCGTCCAGTGGGGGGAACAAGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTTGAAGGTGTTCACTGCACTGATAATGAAAAATGTATCATCAAAATCCTGAAACCCGTAAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAGTCGAAGACCCCCAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTTTATCCTACATTGTCAGATTATGACATACGATATTATATCTATGAACTTCTAAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCCCATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGTCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTCCGTGTGGCTTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCGCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATTTTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAGATAGCTAAGGTACTTGGGACAGATGAGTTAAGTGCATATTTGAGTAAGTATCGAATAGAGTTGGACCCACATCTTGCGGCACTTGTTGGAAGGCATAACCGGAAGCCATGGGTAAAGTTCATTAATGTAGAAAATCAGCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTACGATATGATCACCAAGAACGTCCCACTGCAAAAGAAGCCATGGCCCATCCTTACTTCAATCCAGTTAGAAATGCAGAAAGTAGTAGAACTCGTACACATTGA 1233 0.4453 MAIRPFQFNFSRDRSLFLFRTAQSSHSHSFLRSCQTIAPSFSFRHFAVSAPAPSLSRPPPPDTMAQKIGKSTRRPGASSKARVYVDVNVVRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLSKYRIELDPHLAALVGRHNRKPWVKFINVENQHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPVRNAESSRTRTH. 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02159 410 Gene3D Phosphorylase Kinase; domain 1 111 187 - -
Seca11g02159 410 SMART serkin_6 111 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02159 410 FunFam Casein kinase II subunit alpha 97 187 - -
Seca11g02159 410 ProSiteProfiles Protein kinase domain profile. 111 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02159 410 MobiDBLite consensus disorder prediction 51 79 - -
Seca11g02159 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Seca11g02159 410 Gene3D Transferase(Phosphotransferase) domain 1 188 396 - -
Seca11g02159 410 CDD STKc_CK2_alpha 92 396 IPR045216 GO:0004674|GO:0006468
Seca11g02159 410 SUPERFAMILY Protein kinase-like (PK-like) 82 400 IPR011009 -
Seca11g02159 410 Pfam Protein kinase domain 111 396 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02159 410 PANTHER CASEIN KINASE II SUBUNIT ALPHA 72 406 IPR045216 GO:0004674|GO:0006468
Seca11g02159 410 FunFam Casein kinase II subunit alpha 188 399 - -
Seca11g02159 410 MobiDBLite consensus disorder prediction 390 410 - -
Seca11g02159 410 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02159 Seca-Chr11 29678408 29688247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02159 109 397 Core Cell Cycle Gene Families AT1G76540 30.892 1.03e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Seca11g02159 Pkinase 2.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02159 K03097 - gmx:100776388 705.286