Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02139 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCACTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACTATACTTACAGATCCTGAGTTCAGTGCTATTTTGCGGATGCGATCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAGGAACCTTCCAGCCCCCAAAGTTGACAATAACCATTTGGCCTTGAGTACAGTAGTTCGACGTGAAGAAGTTCACGATACTAAGCCCTTAGCAATTACTGGTGGAACATTGCAATCTCCCAATTCAAAAGAACAAATATCAAGGTTGGGGGATAATCATATATTAGAGGCTGTTGTTAGTATGAAGGAGCCAAAAGGTTCTGACAGGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCGGTGTCCACCAAACCTCAGAAAGTTACTATCAGCAAAACTGAAGCATATGGTGGAAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGAATTACACCAAGTTCAACAGTCACTGAGAAAAGAAGATGCTCTTCCTTGATACATGTGGAAGGGAGGCCCAAAGATTCTCCAGAAGCAGAGAAGAGTGATGATGTTAACATCCTTTCAAAATCCCAAATTGATGCTGAGCTATCAAAAGCGAAGGGCATGACAGCTCAAGAAGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAGTGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG 891 0.4444 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKVDNNHLALSTVVRREEVHDTKPLAITGGTLQSPNSKEQISRLGDNHILEAVVSMKEPKGSDRAAIASYIEEKYRCPPNLRKLLSAKLKHMVESGKIIKEKHKYRITPSSTVTEKRRCSSLIHVEGRPKDSPEAEKSDDVNILSKSQIDAELSKAKGMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAVKALKCKMLHIW. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02139 296 CDD H15 127 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca11g02139 296 FunFam Telomere repeat-binding factor 1 2 58 - -
Seca11g02139 296 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
Seca11g02139 296 Gene3D - 2 59 - -
Seca11g02139 296 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Seca11g02139 296 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Seca11g02139 296 CDD SANT_TRF 6 57 - -
Seca11g02139 296 Coils Coil 243 280 - -
Seca11g02139 296 SMART h15plus2 123 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca11g02139 296 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca11g02139 296 SUPERFAMILY "Winged helix" DNA-binding domain 125 196 IPR036390 -
Seca11g02139 296 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca11g02139 296 Gene3D - 124 196 IPR036388 -
Seca11g02139 296 PANTHER SINGLE MYB HISTONE 4 1 291 IPR044597 GO:0003691
Seca11g02139 296 SMART sant 4 59 IPR001005 -
Seca11g02139 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02139 Seca-Chr11 29335071 29340789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02139 1 296 Single Myb Histone (SMH) Gene Family AT5G67580 54.667 1.28e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g02139 Linker_histone 2.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02139 K09422 - gmx:100779583 425.246