Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02132 ATGTCTGTTTCCCCAACTCTTGACTTGTACTGCAGTGAGACAACTAGTGATGTGGTTCAATTGGATTCCGATGATGCGGGTTTGAATGTTCCATGGGGGTACTCCGATGGTGATGAAACCTGTCTCTTGAGCTTATTAGACTCCGAACTTGATCAACTACAGGAAAAAACAAAGTCATTAGGACAGCTTCGGAAAAAAACATGGTTGATGAATGCAAGAGAAGAGGCCATAAATTGGATCCTAAAGGTGCATGCTTACTACAGTTTTAGACCAGAGACAGCATATCTTTCTATAAATTATCTTGATCGCTTCCTTTTGTCACACACGTTAACGCAAGAAAAAGCGTGGCCTCTGCAGTTGTTATCAGTTGCTTGCTTGGCACTGGCAGCGAAAATGGAAGAAATTAAAGTGCCCCTTCTATTGGACCTACAAGTGATCGAGCCTGGTTTTGTGTTTAAGCCAAAAACGGTTCAAAGGATGGAGCTTTTGGTTATGGCTAGTCTTAAGTGGCGATTGCGCACTATAACCCCTTTTGATTTTGCCTATCTTTTCATTGCTAAGCTTCCATGCTCTGCTTCTACATTGGGAGATTTGGATTATATTGTTTCTCATGTCTCAGATGTTATTATCAGAACATGTTTAGTGAACAATTCACCAGTCATGGATTTCTCAGAGTTTCCACCGTCCACAATAGCAGCAGCTGCACTGTTATTGGTATCAAATCAAAATGTTGGTGACCAGAAATCAGGTTGCATCCACAAGAATATAAGCATTGAGATGGTGCAGAAATGCTACAACCTTATGAAGCAGAAACAGATCATTCGGCGTTCAGAACAATTTTGGCCAAAGAACCTACAGTTATTGCCCTTGAGTCCTACATGTGTGCTTGATCATGCAGCTATGCAAGAAAGCAGCGATGCTCACAAGCCCTGA 933 0.418 MSVSPTLDLYCSETTSDVVQLDSDDAGLNVPWGYSDGDETCLLSLLDSELDQLQEKTKSLGQLRKKTWLMNAREEAINWILKVHAYYSFRPETAYLSINYLDRFLLSHTLTQEKAWPLQLLSVACLALAAKMEEIKVPLLLDLQVIEPGFVFKPKTVQRMELLVMASLKWRLRTITPFDFAYLFIAKLPCSASTLGDLDYIVSHVSDVIIRTCLVNNSPVMDFSEFPPSTIAAAALLLVSNQNVGDQKSGCIHKNISIEMVQKCYNLMKQKQIIRRSEQFWPKNLQLLPLSPTCVLDHAAMQESSDAHKP. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02132 310 SUPERFAMILY Cyclin-like 41 172 IPR036915 -
Seca11g02132 310 Gene3D - 58 173 - -
Seca11g02132 310 PANTHER CYCLINS 67 273 IPR039361 -
Seca11g02132 310 FunFam D6-type cyclin 56 173 - -
Seca11g02132 310 SMART cyclin_7 78 166 IPR013763 -
Seca11g02132 310 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Seca11g02132 310 SUPERFAMILY Cyclin-like 157 277 IPR036915 -
Seca11g02132 310 Gene3D - 174 264 - -
Seca11g02132 310 SMART Cyclin_C_2 175 291 IPR004367 -
Seca11g02132 310 Pfam Cyclin, C-terminal domain 175 272 IPR004367 -
Seca11g02132 310 Pfam Cyclin, N-terminal domain 49 172 IPR006671 -
Seca11g02132 310 CDD CYCLIN_AtCycD-like_rpt2 175 268 - -
Seca11g02132 310 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Seca11g02132 310 Coils Coil 46 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02132 Seca-Chr11 29220322 29222015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02132 60 273 Core Cell Cycle Gene Families AT1G70210 43.891 9.17e-57 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02132 K18810 - gmx:100799323 451.055