Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02124 ATGCCGATGTTTCAGGCTCCTTGTAAGAGGGATGCGGTTGCTGTGTTAGAGGGCGGTGGCGACGGCCAGATTCTAGATCTGGACACTGCAGTGAGAGATGGGGTTTTGGGTGGTGTTGATTCTGGAGTTGTGGGAATTACGGTTGGTGAAAAATTGGATCTTGGGAAGATGATTGAAGAGCTGGACCTATCTGAAGTTCCTTCTGTGCTTATTTGCCCAATTTCCCTTGAGCCAATGCAAGACCCTGTGACCCTTAGCACAGGCCAGACCTATGAGAGGTCCAACATTCTGAAATGGTTCAGTTTGGGGCACTTTACCTGCCCCACCACTATGCAAGAGCTCTGGGATGATTCCATCACTCCAAATACCACACTCTACCGTTTAATAAACACTTGGTTTTCTCAGAAGTACCTGCTAATGAAGAAGAGATCAGAAGATGTGCAGGGGAGGGCCTTGGAACTTCTTGAGACACTGAAGAAGGTGAAGGGCCAAGCTCGTGTTCAGGCCCTCAAGGAGCTTCATCTACTGGTGGCTGCTCATGCCACTGCCCGCAAGGCATTGATTGATGAAGGTGGAGTCTCTATGATGTCATCATTGCTTGGTCCTTTTACTTCCCATGTTGTTGGCTCTGAGGTCATTGGTGTTCTTGTGAGTTTGACCCTTGATTCTGAATCCAAAAAGAGTCTAATGCAGCCTGCGAAGGTTTCATTGATGGTGGACATTTTGAATGAGGGTTCAATTGAGACAAAAATCAATTGTGCTCGGATGATTGAGTCACTCATTGATGAGAATGATTTCAGGTCCTCGGAGATTTTCAAAAGCCATAGCCTTTTAGTTGGGTTGATGAGGCTTGTGAAGGACAAGAGACACACAAATGGAATCTGTGCTGGACTGAGCCTCCTCAAAACATTATGCTTGCATACAGAAGTTAAGAATTTGCTTGTGAGCATTGGGGCTGTTTCTCAATTGGTTGAGTTGTTGTCTGGTCTGGAGCCTGATTGTTTGGAAATGGCACTTTCTATTCTAGATGCATTGGCCTCTAGCCCAGAAGGCATATTGGCTTTGAAGGATTGTTCAAATACCATACCTATTATGGTGAAACTGTTGATGAAGGTCTCAGAGAACTGTACCCAATATGCATTATCAATACTGTGGTCTATGTGCAAGCTTGCACCTGAGGAGTGCTCGTTGATTGCTGTGGAAGCAGGACTTGCTGCAAAGCTCCTCCTTGTGATTCAAAGTGGTTGCAATCCTATATTAAAACAACAGTCTGCTGAGCTTTTGAAGCTGTGTAGTTTAAATTATTCAGATACAATCTTCATTTCCAAGTGCAAGCTTACTAGAACTATCCAATGA 1356 0.4484 MPMFQAPCKRDAVAVLEGGGDGQILDLDTAVRDGVLGGVDSGVVGITVGEKLDLGKMIEELDLSEVPSVLICPISLEPMQDPVTLSTGQTYERSNILKWFSLGHFTCPTTMQELWDDSITPNTTLYRLINTWFSQKYLLMKKRSEDVQGRALELLETLKKVKGQARVQALKELHLLVAAHATARKALIDEGGVSMMSSLLGPFTSHVVGSEVIGVLVSLTLDSESKKSLMQPAKVSLMVDILNEGSIETKINCARMIESLIDENDFRSSEIFKSHSLLVGLMRLVKDKRHTNGICAGLSLLKTLCLHTEVKNLLVSIGAVSQLVELLSGLEPDCLEMALSILDALASSPEGILALKDCSNTIPIMVKLLMKVSENCTQYALSILWSMCKLAPEECSLIAVEAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ. 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02124 451 ProSiteProfiles U-box domain profile. 65 139 IPR003613 GO:0004842|GO:0016567
Seca11g02124 451 PANTHER WDSAM1 PROTEIN 62 437 IPR045185 GO:0061630
Seca11g02124 451 SMART Ubox_2 69 132 IPR003613 GO:0004842|GO:0016567
Seca11g02124 451 SMART arm_5 307 347 IPR000225 GO:0005515
Seca11g02124 451 SMART arm_5 180 221 IPR000225 GO:0005515
Seca11g02124 451 SMART arm_5 348 389 IPR000225 GO:0005515
Seca11g02124 451 Gene3D - 139 446 IPR011989 -
Seca11g02124 451 SUPERFAMILY ARM repeat 141 436 IPR016024 -
Seca11g02124 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 138 IPR013083 -
Seca11g02124 451 SUPERFAMILY RING/U-box 60 136 - -
Seca11g02124 451 Pfam U-box domain 66 136 IPR003613 GO:0004842|GO:0016567
Seca11g02124 451 CDD RING-Ubox_PUB 67 117 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02124 Seca-Chr11 29011087 29012442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02124 1 451 U-box Gene Family AT3G49810 71.840 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02124 - - gmx:100779827 759.599