Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02109 ATGAAGAGTATGGAAAATGATGACACTGTTGACATTAACAATCAAAATAACTGGTTGGGTTTCTCACTCTCACCACAAATGAATATAGGTGTTCCTTCACACCCTCATCAGTCTCAAGAGCCTTCCTCTGCTGCTTCAGAAGTGGTTCCAGCAAGCTTTTACCACTCTGCTTCTCTTAATAACTATGGCTTTTATTATGGACTTGAAGCTGAAAATGTTGGGTTGTATTCCACCCTCCCTATCATGCCTCTCAAATCTGATGGCTCTCTCTATGGAATGGAAGCTTTGAGTAGGTCACAAGCACAAGCAATGGCTACTACTTCAGCACCAAAACTGGAGAATTTCTTAGGTAGTGAGGCGATGGGGACCCCTCACTATGCATGTAGTGCTACAGAAACAATGCCTTTGAGCTTAGATAGTATGCTTTACAATCAACCCTCACGCCGTGACCCAAACAACCCAAATTACCAAAATCAGGTTCAAGTCCAACACATCAACAACCAACAACAACCACAAGAGCTTCATGCTCAACACTTTTCATATTACTCCACCTTGAGGAACCATGAAGTGATGTTAGAAGGCTCCAAGCAAAGTCAAACTTCAGATAACAATCTTCAAGTCCCAAACATGGCTGAGGATGGAGTTCCTGGTCTTAAGAACTGGGTTGTGAGGAACTTCCCAGCAGCTAGCCATGCACAGGAGTCAAAGATGATTGTTCCTGTGGAGGAAAATGAAGGTGAATCAGGGTCCATTGGATCAATGGCATATGGGGATTTGCAATCTTTGAGCTTGTCCATGAGTCCTAGCTCACAGTCAAGTTGTGTTACAAGTTCTCAGCGTACATCACCTGTTGTCATTGATTCTGTTGCTATGGAAACAAAGAAAAGGGGGCCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAATCCATTGATACCTTTGGACAAAGAACCTCCCAATATAGAGGTGTAACAAGACATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGCTGCAAGAAAGAGGGCCAAAGCAGGAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGACCCTCCACTCACATAAACTTCCCTTTGGAAAATTATCAAAATGAACTTGAGGAAATGAAGAACATGACCAGGCAGGAATATGTTGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGACACCACCAACATGGAAGGTGGCAAGCTCGAATTGGTAGGGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGTACCCAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCCGAGGAGTTAATGCTGTAACTAACTTTGATATAACAAAATATGATGTGGAAAAAATCATGGCAAGTAGTAACCTTCTTAGCAGTGAACTAGCTAGGCGGAACAGAGAGGTAGAGGGTGGAACTCAGTATATTGAACACAAGCCTTCATCAACATATGAAGACACTCAACAAGCCATTTTAATGCAGAAGACCTGTGAAGGCCAATCAGATCAGTGGAAGATGGTTCTCTATCAATCCTCCCAACAACAACAACTTGATCAGAATCCACCAAGAATTGAAACTGACAGAACTCATCAATCCTTCTCAGTGTCTTTAGATAACATGTTTCATCAAGAAGTAGAGGAATCAAGTAACAAGATGAGAACACATGTGTCAAATCCTTCATCATTGGCCACAAGTTTAAGCAGCTCAAGAGAAGGTAGCCCAGATAGGACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACAGCCACCAAACTATTGGCTACTAATCCAAATAGTAACGTGAATTCTTGGGATCCATCACCCCATTTGAGGCCTACCCTTTCTCTGCCTCAGATGCCAGTTTTTGCTGCTTGGACAGATTCATAG 1995 0.4266 MKSMENDDTVDINNQNNWLGFSLSPQMNIGVPSHPHQSQEPSSAASEVVPASFYHSASLNNYGFYYGLEAENVGLYSTLPIMPLKSDGSLYGMEALSRSQAQAMATTSAPKLENFLGSEAMGTPHYACSATETMPLSLDSMLYNQPSRRDPNNPNYQNQVQVQHINNQQQPQELHAQHFSYYSTLRNHEVMLEGSKQSQTSDNNLQVPNMAEDGVPGLKNWVVRNFPAASHAQESKMIVPVEENEGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSQRTSPVVIDSVAMETKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSSELARRNREVEGGTQYIEHKPSSTYEDTQQAILMQKTCEGQSDQWKMVLYQSSQQQQLDQNPPRIETDRTHQSFSVSLDNMFHQEVEESSNKMRTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTATKLLATNPNSNVNSWDPSPHLRPTLSLPQMPVFAAWTDS. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02109 664 PRINTS Ethylene responsive element binding protein signature 460 480 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 PRINTS Ethylene responsive element binding protein signature 322 333 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 FunFam AP2-like ethylene-responsive transcription factor 419 480 - -
Seca11g02109 664 Gene3D AP2/ERF domain 420 480 IPR036955 GO:0003700|GO:0006355
Seca11g02109 664 Gene3D AP2/ERF domain 320 386 IPR036955 GO:0003700|GO:0006355
Seca11g02109 664 ProSiteProfiles AP2/ERF domain profile. 420 478 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 MobiDBLite consensus disorder prediction 582 620 - -
Seca11g02109 664 CDD AP2 419 480 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 Pfam AP2 domain 321 376 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 Pfam AP2 domain 421 470 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 MobiDBLite consensus disorder prediction 588 620 - -
Seca11g02109 664 Coils Coil 385 405 - -
Seca11g02109 664 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 561 - -
Seca11g02109 664 FunFam AP2-like ethylene-responsive transcription factor ANT 320 386 - -
Seca11g02109 664 SMART rav1_2 420 484 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 SMART rav1_2 321 390 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 SUPERFAMILY DNA-binding domain 419 479 IPR016177 GO:0003677
Seca11g02109 664 CDD AP2 320 384 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 ProSiteProfiles AP2/ERF domain profile. 321 384 IPR001471 GO:0003700|GO:0006355
Seca11g02109 664 SUPERFAMILY DNA-binding domain 320 386 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02109 Seca-Chr11 28692687 28697056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02109 401 664 AP2-EREBP Transcription Factor Family AT4G37750 26.087 1.62e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Seca11g02109 AP2 4.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02109 K09285 - gmx:100787611 999.964