Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02102 ATGGGGAGGGCTCCTTGCTGTGACAAAGCCACCGTCAAGAGAGGTCCATGGTCGCCTGAAGAAGACGCCAAACTCAAGACTTACATCCAACAGTACGGCACCGGTGGCAACTGGATTGCTCTTCCACACAAAATAGGCCTTAAAAGGTGTGGGAAAAGCTGTCGTCTTAGATGGCTTAATTATCTTCGCCCAAATCTTAAACATGGGAGTTTCTCACAAGAAGAAGACAACATCATTTGCACCCTCTATCTTAATATTGGAAGCAGGTGGTCGATCATAGCAGCACAATTACCAGGGCGCACAGATAATGATATAAAGAACTACTGGAACACTAAGTTGAAGAAGAAGCTTTTAGAAAAGCAAAGGAAGGAGCAACAACAGGCTCAGGCTCAGGCTCGCCGAATTAGCAGCCTAAAGCAAGAGATCAAGAGAGAAAGTAGTGAAAGTTTGGTGTTACCTGTGGGAGTTATAAGCCAAACTGATCCCTATTATTATTATTATTATCCAACACAGCAACACTCCTTGTCCATTCCAGTGGCAAATGCTGCTACTTCCATCATCCAAGACTATAATCTCACTAATCAAACAACATCACTAGAAGATCATCAACAGCCATACACCATGAATTCATCACAATACTCATGTGACATCATTTCCTTCCCACAAGACCCATCCACAATGAATAACATGATAACCTCCACACCAAACATATTTCAAGGGTTTGGGTTGAATTACCAGCAACAACAAATAGATGATGGTGGATCAGTGGAGCTTTTTTATGGAATGGAGGGTAATGGTAGCACGAGTACGGCTTCAACAGAAAGCAATAATAATTGGGGAGATATAAGCTCTTTGGTTTACTCACCTCTGCTTTCTGGCTATGAAGGTGGCCAGGCAATGCCTCATGCTGTTACTTTCGAGGAGGAGTGTAGGTACTTTGGGATGCAAGCGCAATAA 957 0.4316 MGRAPCCDKATVKRGPWSPEEDAKLKTYIQQYGTGGNWIALPHKIGLKRCGKSCRLRWLNYLRPNLKHGSFSQEEDNIICTLYLNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLEKQRKEQQQAQAQARRISSLKQEIKRESSESLVLPVGVISQTDPYYYYYYPTQQHSLSIPVANAATSIIQDYNLTNQTTSLEDHQQPYTMNSSQYSCDIISFPQDPSTMNNMITSTPNIFQGFGLNYQQQQIDDGGSVELFYGMEGNGSTSTASTESNNNWGDISSLVYSPLLSGYEGGQAMPHAVTFEEECRYFGMQAQ. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02102 318 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Seca11g02102 318 Gene3D - 7 68 - -
Seca11g02102 318 Coils Coil 113 148 - -
Seca11g02102 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Seca11g02102 318 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Seca11g02102 318 CDD SANT 16 62 IPR001005 -
Seca11g02102 318 FunFam Transcription factor RAX3 7 68 - -
Seca11g02102 318 Gene3D - 69 145 - -
Seca11g02102 318 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Seca11g02102 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Seca11g02102 318 PANTHER OS09G0431300 PROTEIN 1 270 - -
Seca11g02102 318 SMART sant 13 64 IPR001005 -
Seca11g02102 318 SMART sant 67 115 IPR001005 -
Seca11g02102 318 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Seca11g02102 318 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02102 Seca-Chr11 28576175 28577710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02102 1 288 MYB Transcription Factor Family AT3G49690 48.750 6.45e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g02102 Myb_DNA-binding 4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02102 K09422 - gmx:100791406 340.502