Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02098 ATGGGTCTTGATCAGGATGGTAGTAACTCAGGCCTTCAGCTTATTCTAGGATTAGCTTTGACTCTCACACCGCAAGATACCCACAAGGTGGATGATGTTAGGCCAAGCCCAACGCCAAGGAAGGCTTATTATGAGGCTGAGCCATCGTTAACGTTGGGTCTGTCCGGTGAGAGTTATCCTCATGCGCAGCAAGTGGTCAAAAATAATAAGATGGATATAATAGAGCACAGTAATAATAAAGTTTATTACTGTAGTGAGGACCCTCTTGATCATTTGTCTACACAGACTTCACCTCACACTCACAGCGCTGTTTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATCTTAGCAGTGAAGAAATTGAGGCAACAGAGTTAGAGAGGGTTTCTTCACGAGCCAGCGATGAAGATGAAGAAGGAACCACTACCAGGAAGAAACTCAGGCTTACCAAAGAACAATCTGCTATGCTTGAGGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAGGCTTTAGCGAAGCAGTTAAATCTACGGCCTCGACAAGTTGAGGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTAAAGAAATGCTGTGAAACGTTGACAGATGAGAATAGGAGGCTACAGAAGGAGCTGCAAGAGTTGAAGGCACTGAAACTCTCACAGCCTTTGTATATGCCTATGCCTGCGGCAACTCTCACCATGTGCCCTTCTTGTGAGAGGCTTGGTGGTGTCAACGGTGGTGCTTCTAATAAAACTCCATTCTCCATCGCTCCCAAGCCTCACTTCTTCAACCCCTTCACCAATCCTTCTGCAGCATGTTGA 876 0.4726 MGLDQDGSNSGLQLILGLALTLTPQDTHKVDDVRPSPTPRKAYYEAEPSLTLGLSGESYPHAQQVVKNNKMDIIEHSNNKVYYCSEDPLDHLSTQTSPHTHSAVSSFSSGRVKRERDLSSEEIEATELERVSSRASDEDEEGTTTRKKLRLTKEQSAMLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYMPMPAATLTMCPSCERLGGVNGGASNKTPFSIAPKPHFFNPFTNPSAAC. 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02098 291 MobiDBLite consensus disorder prediction 93 109 - -
Seca11g02098 291 CDD homeodomain 146 203 IPR001356 GO:0003677
Seca11g02098 291 SMART HOX_1 144 206 IPR001356 GO:0003677
Seca11g02098 291 SMART halz 202 245 IPR003106 GO:0006355|GO:0043565
Seca11g02098 291 FunFam Homeobox-leucine zipper protein 18 130 207 - -
Seca11g02098 291 MobiDBLite consensus disorder prediction 93 148 - -
Seca11g02098 291 Gene3D - 150 200 - -
Seca11g02098 291 Coils Coil 208 238 - -
Seca11g02098 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 267 - -
Seca11g02098 291 SUPERFAMILY Homeodomain-like 135 203 IPR009057 -
Seca11g02098 291 MobiDBLite consensus disorder prediction 110 148 - -
Seca11g02098 291 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355|GO:0043565
Seca11g02098 291 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677
Seca11g02098 291 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981|GO:0006355
Seca11g02098 291 Pfam Homeodomain 146 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02098 Seca-Chr11 28456791 28458782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02098 1 291 Homeobox Transcription Factor Family AT4G37790 60.131 4.84e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca11g02098 Homeodomain 8.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02098 K09338 - gmx:100784129 390.963