Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02086 ATGCGCCTCCTGCCATTGTTGCTGCTATTCCTGTTAGAGTTTGTTTCTGCTGCTCACATCTCAGAATACCGCGCTCTTCTCTCATTCAAAGCATCCTCCATCACCGACGACCCCACCCACTCCCTTTCCTCATGGAACGACTCCTCCTCACACTGTTCCTTTCACGGCGTCACTTGTGGTCCCCGCCGCCATGTTATCTCCCTCGACCTCTCCTCTCTCTCCCTCTCCGGCACTCTCTCCGATGACCTCTCCGCTCTCCCCTTCCTCTCTCACCTCTCCCTCGCTGATAACCAGTTCTCCGGCCCCATCCCTCCCTCCTTTTCCTCCCTCTCCTCCCTCCGCTTCCTTAACCTCTCCAACAATGTCTTCAATGGCACCTTCCCTTCCCAGCTCTCTCGTCTCTTCAACCTTCAGGTACTTGACCTTTACAACAACAACATGACGGGTCCTCTTCCTCTTGAGGTTACTCGCATGCCCTTTCTCCGCCATTTGCATCTCGGTGGGAACTTTTTCTCGGGCAAGATCCCGCCGGAGTATGGCGGCTGGCTCCACCTCGAGTACCTCGCCGTCTCCGGCAACGAGCTTGCCGGTGCCATTCCGCCGGAGATCGGTAACCTCACCAGCCTCAAAGAGCTTTACATTGGCTACTACAACACCTATGACGGTGGAATACCGCCTGAGATCGGGAACTTGTCTCAGCTGGTGAGGCTCGACGCCGCTTACTGTGGATTGTCCGGTGAGATTCCGGCGGAGATGGGGAAGCTTCAGAACCTTGATACTCTTTTCCTTCAGGTGAATGCGCTTTCCGGTTCTCTTACTCCTGAGCTCGGGAACCTCAAGAGCCTCAAGTCCATGGATTTGTCCAACAACATGCTCGCCGGCGAGGTTCCGGCGAGCTTTGCTGAGCTGAAGAACCTTACCCTTTTGAACCTGTTCAGGAACAAGCTTCATGGGGCGATTCCTGAGTTCATCGGAGAGTTGCCGGCGCTGGAAGTGCTGCAGCTTTGGGAGAACAACTTTACTGGGAGCATTCCTCAGAGTTTAGGGAAGAATGGAAAGCTTACCCTTGTTGATCTTTCCTCTAACAAATTGACAGGGACTCTTCCCCCTGATATGTGTTCTGGGAATCATCTTCAGACTCTGATAACTCTGGGAAATTTCTTGTTTGGTCCCATCCCCGAGTCGCTTGGAAAGTGCGAGTCTTTGAATAGGATACGCATGGGGGAGAACTTTCTGAATGGTTCTATCCCAAAAGGGCTTTTTGGGCTTCCAAAACTTACCCAGGTTGAGCTTCAGGACAATCTTCTCTCTGGCCAGTTTCCTGAGGCTGGTTCCATGTCTACAAATCTGGGTCAGATTAGTCTCTCCAACAACAAGCTTTCTGGGCCGTTGCCACCTACCATTGGGAACTTTACCAGCATGCAAAAGCTTCTCCTTGATGGCAACAAGTTCTCGGGTCGAATCCCTCCTGAGATTGGGAGATTGCAACAGCTCTCAAAGATAGATTTTAGCCACAACAAGTTCTCTGGGCCTATTGCGCCTGAGATCAGTCAATGCAAGCTATTGACTTTCGTTGATCTTAGCCGTAATGAGCTCACAGGTGAGGTTCCGAATGAGATAACAGGTATGAGAATATTGAACTACTTGAACCTTTCAAGAAATCACCTTGTTGGTGCCATTCCAGCTTCTATTGCCTCCATGCAAAGTTTAACTTCTGTTGATTTTTCATACAACAATCTCTCTGGTTTGGTTCCTGGTACCGGCCAGTTCAGCTATTTCAACTATACCTCTTTCCTGGGTAACCCTGAACTCTGTGGCCCTTATTTGGGTCCTTGCAAAGATGGGGTTGCCAATGGCCCTCGCCAACCTCATGTTAAAGGTCCACTTTCTTCTTCTTTGAAGCTTCTGCTGGTTATTGGTTTACTTGTGTGCTCTATTGCATTTGCTGTTGCGGCAATATTCAAAGCTCGGTCTCTGAAGAGGGCCAGTGAAGCTCGTGCATGGAAATTGACTGCATTCCAACGTTTGGACTTCACTGCGGATGATGTTTTGGATTGCTTGAAAGAGGACAACATAATAGGGAAAGGAGGTGCAGGCATTGTTTACAAAGGTTCAATGCCTAATGGGGATCAGGTTGCTGTGAAAAGGTTACCAGCTATGAGCAGAGGATCTTCTCATGATCATGGGTTTAATGCAGAGATTCAGACATTAGGGCGAATTCGACACAGACACATTGTTAGATTACTGGGTTTCTGTTCAAACCATGAAACAAATCTCTTGGTCTATGAATACATGCCTAATGGAAGCTTAGGTGAAGTCCTTCATGGTAAGAAAGGTGGTCATTTGCATTGGGACACCAGATATAAAATTGCTGTGGAAGCTGCAAAAGGCCTTTGCTATCTACATCATGACTGTTCACCACTTATTGTCCATCGAGATGTAAAATCAAACAACATCCTTCTTGATTCCAATTTTGAAGCTCATGTTGCTGATTTTGGGCTCGCTAAGTTCCTTCAAGATTCCGGAACATCTGAATGCATGTCTGCTATTGCCGGTTCTTATGGATACATAGCACCAGAGTATGCCTACACATTGAAAGTTGATGAGAAAAGTGATGTGTACAGCTTTGGTGTGGTTCTTCTTGAGCTTGTAACAGGGAGGAAACCAGTTGGAGAATTTGGTGATGGAGTGGACATTGTGCAATGGGTGAGAAAAATGACAGACTCAAACAAGGAAGGTGTTCTAAAAGTTCTTGATCCTAGACTTCCCTCAGTTCCACTTCATGAGGTGATGCATGTGTTCTATGTAGCCATGTTGTGTGTTGAGGAACAAGCAGTAGAGAGACCAACTATGCGTGAAGTTGTTCAAATTCTGACTGAGCTTCCAAAGCCACCTAGCTCAAAACATGGAGACTTAACAATCACTGAATCATCTTTGTCATCATCAAACAGTCTAGAGTCTCCAACTACAGCATCTAAAGAACCTAAAGATCATCAACATCCTCCTAGGTCACCACCCCCTGATCTTCTTAGCATATGA 3039 0.4758 MRLLPLLLLFLLEFVSAAHISEYRALLSFKASSITDDPTHSLSSWNDSSSHCSFHGVTCGPRRHVISLDLSSLSLSGTLSDDLSALPFLSHLSLADNQFSGPIPPSFSSLSSLRFLNLSNNVFNGTFPSQLSRLFNLQVLDLYNNNMTGPLPLEVTRMPFLRHLHLGGNFFSGKIPPEYGGWLHLEYLAVSGNELAGAIPPEIGNLTSLKELYIGYYNTYDGGIPPEIGNLSQLVRLDAAYCGLSGEIPAEMGKLQNLDTLFLQVNALSGSLTPELGNLKSLKSMDLSNNMLAGEVPASFAELKNLTLLNLFRNKLHGAIPEFIGELPALEVLQLWENNFTGSIPQSLGKNGKLTLVDLSSNKLTGTLPPDMCSGNHLQTLITLGNFLFGPIPESLGKCESLNRIRMGENFLNGSIPKGLFGLPKLTQVELQDNLLSGQFPEAGSMSTNLGQISLSNNKLSGPLPPTIGNFTSMQKLLLDGNKFSGRIPPEIGRLQQLSKIDFSHNKFSGPIAPEISQCKLLTFVDLSRNELTGEVPNEITGMRILNYLNLSRNHLVGAIPASIASMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPELCGPYLGPCKDGVANGPRQPHVKGPLSSSLKLLLVIGLLVCSIAFAVAAIFKARSLKRASEARAWKLTAFQRLDFTADDVLDCLKEDNIIGKGGAGIVYKGSMPNGDQVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLHWDTRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWVRKMTDSNKEGVLKVLDPRLPSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQILTELPKPPSSKHGDLTITESSLSSSNSLESPTTASKEPKDHQHPPRSPPPDLLSI. 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02086 1012 SMART LRR_typ_2 327 351 IPR003591 -
Seca11g02086 1012 SMART LRR_typ_2 110 134 IPR003591 -
Seca11g02086 1012 SMART LRR_typ_2 352 375 IPR003591 -
Seca11g02086 1012 SMART LRR_typ_2 86 109 IPR003591 -
Seca11g02086 1012 SMART LRR_typ_2 471 495 IPR003591 -
Seca11g02086 1012 SMART LRR_typ_2 567 590 IPR003591 -
Seca11g02086 1012 SMART LRR_typ_2 279 302 IPR003591 -
Seca11g02086 1012 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 377 959 - -
Seca11g02086 1012 SUPERFAMILY L domain-like 296 612 - -
Seca11g02086 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 656 764 - -
Seca11g02086 1012 Pfam Protein tyrosine and serine/threonine kinase 689 958 IPR001245 GO:0004672|GO:0006468
Seca11g02086 1012 MobiDBLite consensus disorder prediction 970 990 - -
Seca11g02086 1012 Gene3D Transferase(Phosphotransferase) domain 1 765 976 - -
Seca11g02086 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 809 821 IPR008271 GO:0004672|GO:0006468
Seca11g02086 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 16 79 - -
Seca11g02086 1012 SUPERFAMILY Protein kinase-like (PK-like) 683 958 IPR011009 -
Seca11g02086 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Seca11g02086 1012 Gene3D Ribonuclease Inhibitor 15 82 IPR032675 -
Seca11g02086 1012 Gene3D Ribonuclease Inhibitor 83 342 IPR032675 -
Seca11g02086 1012 Gene3D Ribonuclease Inhibitor 343 616 IPR032675 -
Seca11g02086 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 765 975 - -
Seca11g02086 1012 Pfam Leucine rich repeat N-terminal domain 21 59 IPR013210 -
Seca11g02086 1012 SUPERFAMILY RNI-like 67 389 - -
Seca11g02086 1012 Gene3D Phosphorylase Kinase; domain 1 655 764 - -
Seca11g02086 1012 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 80 323 - -
Seca11g02086 1012 SMART serkin_6 687 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02086 1012 MobiDBLite consensus disorder prediction 962 1012 - -
Seca11g02086 1012 ProSiteProfiles Protein kinase domain profile. 687 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02086 Seca-Chr11 28215559 28219183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02086 14 988 Receptor kinase-like Gene Family AT5G65700 81.957 0.0 1603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca11g02086 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02086 - - gmx:100499646 1762.27