Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02074 ATGATGCAAATTTCATCAACCAAGTACTTGCCTGAATTTCAACAGGGAATGGAGGATCCAACTCCCTTTCATCAATACCCTCCGATGGATTCCTTTGCATTCCAGCTTGATGATCTTGATTTTGACTCATTCTCCGAGTCCCTAGAGAGCCATTCCTCTCATAAGCGATTCAATTCCGAAAGCACACAAAACTCTTTCCCCGTTGAAAGTCCTGAATATCAATCTGTTGCCCCTGCTACAAGACCAACCAAACAGCTCAAGACTAGTACTCCTTATGCCTCTGACTTGAAGACACCCAACAAGGCTTCTCCTAATTCATCCTCAAAAATCATTTCTTTTGAGCACTCCAATGTTGCTTCCCAACAATTCTACAAAATGGATCCCAATGTGAAGCCAAAAACCGAGACAGGGTATGGTGAAAACTTGGATTTTACAGCTGCTATTTCTCAAGGTTCCTTAAACTATGATAAACTAGAGAACAAGGCTACCACTACAACAGCTAGAAACTCTGTTCAAGCTCGAGATCATGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCAGCTATCCTTCCTGGACTCAAAAAGACGGATAAGGCTTCTGTGTTGGAAGATGCTATCAAGTATGTGAAACAACTACAGGAACAGGTGAAGAATCTGGAGGAAAAGGTAACAGATAAAACAGTTGAATCAGCAGTTTTTGTGAAGAAGTCTATTATCTTTTCAGATGATGATAGCTCTTCTTCAGATGAAAACTCTGACCAACAGTTACTCCCTGAAATCGAAGCAAGAGTTTCAGGGAAACATGTACTCATCAGAATCCACTGTGACAAACACAGTGGACGAGCATCGCTTGCATTACTCAGTGAATTAGAAAAGAATCATCTCACAGTTCAGAGTAGCAGCGTTTTGCCTTTTGGGAATAACACTCTTGACATAACCATTGTTGCTCAGATGAACAAGGAATACAACTTGAAAACAAAGGATCTCATAAGAAGGTTAAATCAAGCTTTGAGGCAGCTCATTTGA 1050 0.4057 MMQISSTKYLPEFQQGMEDPTPFHQYPPMDSFAFQLDDLDFDSFSESLESHSSHKRFNSESTQNSFPVESPEYQSVAPATRPTKQLKTSTPYASDLKTPNKASPNSSSKIISFEHSNVASQQFYKMDPNVKPKTETGYGENLDFTAAISQGSLNYDKLENKATTTTARNSVQARDHVIAERKRREKLSQRFIALSAILPGLKKTDKASVLEDAIKYVKQLQEQVKNLEEKVTDKTVESAVFVKKSIIFSDDDSSSSDENSDQQLLPEIEARVSGKHVLIRIHCDKHSGRASLALLSELEKNHLTVQSSSVLPFGNNTLDITIVAQMNKEYNLKTKDLIRRLNQALRQLI. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02074 349 CDD bHLH_AtNAI1_like 173 245 - -
Seca11g02074 349 SMART finulus 177 226 IPR011598 GO:0046983
Seca11g02074 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 220 IPR011598 GO:0046983
Seca11g02074 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 233 IPR036638 GO:0046983
Seca11g02074 349 MobiDBLite consensus disorder prediction 57 108 - -
Seca11g02074 349 Pfam Helix-loop-helix DNA-binding domain 175 221 IPR011598 GO:0046983
Seca11g02074 349 MobiDBLite consensus disorder prediction 51 108 - -
Seca11g02074 349 Gene3D - 170 240 IPR036638 GO:0046983
Seca11g02074 349 MobiDBLite consensus disorder prediction 1 29 - -
Seca11g02074 349 Coils Coil 327 347 - -
Seca11g02074 349 Coils Coil 210 237 - -
Seca11g02074 349 PANTHER BHLH TRANSCRIPTION FACTOR 31 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02074 Seca-Chr11 27952543 27954841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02074 99 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.412 4.66e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g02074 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02074 - - gmx:100798011 382.104