Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02068 ATGGCTTCAGTGGAGGAATCATGGACTGATTGGTTGTGTGATATGGAACCAGATCATTACACTTTCATCAACCAATCAGAAACAAAGGTGGATGATGCAAGTTTACCATCCCAACATGATATAGCTACTGCTCCACAGGAAGAAAATCCTCAAAGATCTTTCTCTACAGAGGGCCACTGTTCATATGCAACTTTCAACACAGAAAACACCAGCACCACTATGAGCAATTCTTCAGTGGCAGAGAGCACCTTAGAGAGGCCTTCCAAGTTACTCAAAACCGAGTCACAAAAGACATCTTCTTCTCCTTCCTCTTACATTCTTTCCTTTGACAAAGCCAATCCACCCCCAATAAAGGTTGAACCAGCCTTGAAGCCCAAAACCAAGGTTATGAATCATGGAATAATGCTTTTGAATTCAAAGATTAATGAACCTAAACGCGTTATTCAGGAGGGTAAGAAGATCAACTCTTCCAGATCTACTCATCACACACCAGATCACATAATTGCTGAGAGAATGAGAAGAGAAAAGATTAGCCAACAGTTCATAGCTCTTTCAGCCCTTATTCCAGACCTTAAAAAGATGGACAAGGCCTCTGTGTTGGGTGATGCTATAAAGTACTTGAAACAGCTCAAGGAGCAAGTGAAACAGTTGGAGGAGCAGAGCAAAAGGAAAAGCGTGGAATCGGTGGTGTTTGTGAAGAAATCTTCTCAGGTCTCTGCGGATGAAGATGTTTCAGATACCTCTTCAAATTCCTGTAATGGGAACTCTGATGATCCCTCAAAAATTAATCTTTCACTGCCAGAAGTTGAAGCGAGGGTGTCAGAGAAGAAAGTGCTAATTCGAATCCTCTGTGAGAAAGAAAAGGCAGTGCTGGGGAATATATTTAAGGAGATAGAGAAACTTCATCTCTCAGTGATCAATAGCAGCTCCTTTTGTTTCGGTTCATCCGTTATGGTCATAACTACCATAGCCGAGATGGACGATGAGTTCAGCATGAGCGTGAAGAAACTGGCTAGAAACCTCAGAGTTGGACTGATGCAATTTATGTAG 1050 0.42 MASVEESWTDWLCDMEPDHYTFINQSETKVDDASLPSQHDIATAPQEENPQRSFSTEGHCSYATFNTENTSTTMSNSSVAESTLERPSKLLKTESQKTSSSPSSYILSFDKANPPPIKVEPALKPKTKVMNHGIMLLNSKINEPKRVIQEGKKINSSRSTHHTPDHIIAERMRREKISQQFIALSALIPDLKKMDKASVLGDAIKYLKQLKEQVKQLEEQSKRKSVESVVFVKKSSQVSADEDVSDTSSNSCNGNSDDPSKINLSLPEVEARVSEKKVLIRILCEKEKAVLGNIFKEIEKLHLSVINSSSFCFGSSVMVITTIAEMDDEFSMSVKKLARNLRVGLMQFM. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02068 349 MobiDBLite consensus disorder prediction 93 108 - -
Seca11g02068 349 MobiDBLite consensus disorder prediction 29 109 - -
Seca11g02068 349 Pfam Helix-loop-helix DNA-binding domain 166 211 IPR011598 GO:0046983
Seca11g02068 349 SMART finulus 167 216 IPR011598 GO:0046983
Seca11g02068 349 PANTHER BHLH TRANSCRIPTION FACTOR 46 348 - -
Seca11g02068 349 Coils Coil 200 227 - -
Seca11g02068 349 MobiDBLite consensus disorder prediction 39 84 - -
Seca11g02068 349 MobiDBLite consensus disorder prediction 241 260 - -
Seca11g02068 349 Gene3D - 158 231 IPR036638 GO:0046983
Seca11g02068 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 228 IPR036638 GO:0046983
Seca11g02068 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02068 Seca-Chr11 27687191 27689919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02068 157 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.515 4.49e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g02068 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02068 - - gmx:100803386 385.956