Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02067 ATGGAGGAAATAAACACACCAATAGATGTATCTGCAGCCAACTGGTTATCTGATTTGGAAATGGATGATTACAACTTATTTCCTGATGAATGCCACTTGAACTTGCTTAATGTTGATGATGAAGAGTTTCTTTCACATGACATAGCTAGTGCCCTGCAGGGACAGACCCTGCAACAGTCTTTATCTTCAGAGTGCACTTCCAAAACTCTGACCAACTCATTCACTGATGAAACCAGTTTTGACTTTGAGAGACCTGCCAAGTTGCTGAAAACAATTAGTACTACTAGTGGTTCTAACTCATCCAGCATCACTGAAAACATTTCACCAAAACTTTCCCCATCATCATCTAATTCTTCCTTTCAGTCTCAGATTCTGTCTTTTGACAACCCAACAAACTCATCCCTTGCCAACACCACCCAGTTTTATGGGTTTGAATGTGCCTTTAACCCAAAACAAAATAAGATGGTGTCACTGTCACTGCCCCAATTGGGAAATCCGCATCTCTCAACTCAAACCCCAAAAGGGTCCTCAAAAAATCAAAACTTTGAAACAAAAACCTCACATAGTAAGAGGTCTCCAGCTCACGCTCAAGATCACATCATGGCAGAGAGAAAGCGTAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAAAAGATGGACAAGGCTTCGGTATTAGCGGACGCTATCAAGTATGTGAAAGAGTTAAAAGAGCGTTTGGCAGTGTTGGAAGAGCAGAGGAAGAAAACAAAAGGAGCAGAGTCGGTAGTGGTTCTGAACAAATCAGAGCTCTGTGGTGAAGATGATTCCTCTTCATGTGATGAGAGCATCGAGGGTAATGGTGCCAGTGAATCAATGTTCCAAGTGGAAGCAAGGGTATCAGGGCAGGAGATGCTTATTCGGATCCATTGTCATAAACATAAGGGAATTGTTGCCAAAATTCTCACCGAGATTCAAAGTTTTCACCTATTTGTCATCAATAGCAGTGTCTTACCCTTTGGGGATTCTATCCTCGACATTACCATCATAGCTCAGATGGGAGAAGATTACGACTTGACCATCAAGGAACTTGTCAAGAACCTACGCACGGCAACATTGAAATCTATGTCATAA 1134 0.4233 MEEINTPIDVSAANWLSDLEMDDYNLFPDECHLNLLNVDDEEFLSHDIASALQGQTLQQSLSSECTSKTLTNSFTDETSFDFERPAKLLKTISTTSGSNSSSITENISPKLSPSSSNSSFQSQILSFDNPTNSSLANTTQFYGFECAFNPKQNKMVSLSLPQLGNPHLSTQTPKGSSKNQNFETKTSHSKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLADAIKYVKELKERLAVLEEQRKKTKGAESVVVLNKSELCGEDDSSSCDESIEGNGASESMFQVEARVSGQEMLIRIHCHKHKGIVAKILTEIQSFHLFVINSSVLPFGDSILDITIIAQMGEDYDLTIKELVKNLRTATLKSMS. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02067 377 Coils Coil 233 260 - -
Seca11g02067 377 PANTHER BHLH TRANSCRIPTION FACTOR 50 374 - -
Seca11g02067 377 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Seca11g02067 377 Pfam Helix-loop-helix DNA-binding domain 198 243 IPR011598 GO:0046983
Seca11g02067 377 MobiDBLite consensus disorder prediction 93 123 - -
Seca11g02067 377 Gene3D - 181 259 IPR036638 GO:0046983
Seca11g02067 377 MobiDBLite consensus disorder prediction 160 202 - -
Seca11g02067 377 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 256 IPR036638 GO:0046983
Seca11g02067 377 MobiDBLite consensus disorder prediction 160 183 - -
Seca11g02067 377 MobiDBLite consensus disorder prediction 184 202 - -
Seca11g02067 377 SMART finulus 200 249 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02067 Seca-Chr11 27561445 27563665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02067 84 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.345 4.13e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g02067 HLH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02067 - - gmx:100788128 509.605