Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02066 ATGGCTGCAGAGATTGGCCTTCTCTCCATGACCCAGATCCAAAATTTGTCACCACAGTACTCCCAACATCAAAATCAACCCCAACCAAACCCTAGTCACCACCACACCACCATCTCAACTTGGATGTGGAATCCTAAGGAACAGCAAGGTGAAGAAGATGACTCATGGGAAGTCAGAGCCTTTGCAGAAGACACCAGAAACATCATGGACACCACTTGGCCTCCAAGATCTTACACCTGCACCTTTTGCAGAAGGGAGTTCCGTTCAGCACAAGCTCTTGGTGGCCACATGAATGTTCACCGCCGTGACCGTGCTCGCCTCCACCACCACCAACCACACTACCCTCCTTCAGGTTCACCCATTCCCACATCACCACCATTCATTAACATCCCACCTCAAGAGCTTGTTGCAAATGGTGGCTTGTGCTTCCTCTACCATTTGCCAAGCCCTAATGCTCCTCCATTCCCCACTCATACTCTCAATGCATGTGGTGAATCACCCTCTTCTCTTCTCTCTGCTGTCTCTTCCTACCCACCAAACAACTTTATGGTGATGCCAACTTCCTTTGATTTAGATAAAGCTGCAGGGATCAATGGTCTTTCTTCTTATTCCTCCTCAAGCAAAGTGGAAGAAGAACCCACAAGCTCTTCTACTAATCAAGCCCCCCGGGAGGAGCTTGATCTAGAGTTACGCTTGGGGCATAGATCAACACCATCTTCATGA 723 0.4882 MAAEIGLLSMTQIQNLSPQYSQHQNQPQPNPSHHHTTISTWMWNPKEQQGEEDDSWEVRAFAEDTRNIMDTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHHHQPHYPPSGSPIPTSPPFINIPPQELVANGGLCFLYHLPSPNAPPFPTHTLNACGESPSSLLSAVSSYPPNNFMVMPTSFDLDKAAGINGLSSYSSSSKVEEEPTSSSTNQAPREELDLELRLGHRSTPSS. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02066 240 Pfam C2H2-type zinc finger 78 102 - -
Seca11g02066 240 SMART c2h2final6 78 100 IPR013087 -
Seca11g02066 240 MobiDBLite consensus disorder prediction 18 38 - -
Seca11g02066 240 SUPERFAMILY beta-beta-alpha zinc fingers 75 105 IPR036236 -
Seca11g02066 240 MobiDBLite consensus disorder prediction 200 240 - -
Seca11g02066 240 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 105 IPR013087 -
Seca11g02066 240 PANTHER OS07G0101800 PROTEIN 51 235 - -
Seca11g02066 240 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Seca11g02066 240 MobiDBLite consensus disorder prediction 200 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02066 Seca-Chr11 27494017 27494739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02066 39 234 C2H2 Transcription Factor Family AT4G17810 42.289 2.41e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g02066 zf-C2H2_6 5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02066 - - gmx:100818142 275.404