Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02065 ATGAGGCCATGTATGGAACAACAGACTATTAGCATCACAAAAGCAGGAATACAAGCAACACTTAATGCTCGTACTTCCATTCTTGCCGCTGCCAACCCTGCAGAGGGACGCTATGATAAGTCTAAACCACTAAAGTATAATGTGGCTCTTCCACCAGCTATAATTTCAAGGTTTGATCTTGTATATGTTATGATTGATGACCTAGACGATCAGACAGATTACCACATAACTCATCATATCGTGAGAGTTCATCAAAAGCTTGAAGATTCTCTTGCTCCAGCATTCACTACAGTAGAACCGAAGCGTTACATAGGTTATACAAATACCTTACATTGA 336 0.3988 MRPCMEQQTISITKAGIQATLNARTSILAAANPAEGRYDKSKPLKYNVALPPAIISRFDLVYVMIDDLDDQTDYHITHHIVRVHQKLEDSLAPAFTTVEPKRYIGYTNTLH. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02065 111 Gene3D - 1 111 IPR027417 -
Seca11g02065 111 ProSiteProfiles MCM family domain profile. 1 80 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g02065 111 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 90 IPR027417 -
Seca11g02065 111 PRINTS Mini-chromosome maintenance (MCM) protein family signature 3 16 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g02065 111 PRINTS Mini-chromosome maintenance (MCM) protein family signature 27 39 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g02065 111 PRINTS Mini-chromosome maintenance (MCM) protein family signature 54 62 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g02065 111 Pfam MCM P-loop domain 4 84 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca11g02065 111 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 4 108 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02065 Seca-Chr11 27487367 27487799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02065 5 110 Core DNA Replication Machinery Family AT5G44635 83.019 5.72e-55 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02065 K02542 - csv:101219775 189.504