Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02063 ATGGCTGGTTTGGATTTAGGAAGTGCTTCACGCTTTGTTCAAAACCTTCACAGACCAGACTTGCACCTTCAGCAGCACGTTCACGATTCCGAAGAAAACCAGCAAGAACTGAACCGCGGTGGTGCAGGACCGTTTTCGAGCGAAGACGATGACCGAAGCCAAGGCTTGGAGCTAGCCTCGGCGGCAGGTCCGGGTGACGTGGTTGGACGTCGTCCACGTGGCAGGCCGCCGGGATCAAAGAACAAGCCGAAGCCGCCGGTGATTATAACGAGAGAGAGCGCAAACACTCTGAGGGCTCATATTCTCGAAGTCGGAAGTGGCTCCGACGTTTTCGAATGCGTAACTACCTACGCGCGGCGTCGACAGCGTGGGATCTGTGTTCTCAGCGGTAGCGGTACCGTTACCAATGTCAGTCTCCGGCAACCGGCGGCGGCTGGAGCCGTCGTCACGCTCCATGGAAGGTTCGAGATACTGTCTCTCTCCGGTTCGTTTCTCCCGCCGCCGGCTCCGCCAGGGGCGACTAGTCTGACGATATACCTCGCCGGAGGACAGGGACAGGTGGTCGGAGGGAGCGTGGTTGGGGAACTTACGGCGGCGGGACCGGTGATAGTGATCGCGGCTTCGTTCACGAACGTGGCTTATGAGAGGCTGCCGTTGGAGGAGGAGGAACAGCAGGTTCAGATGCAGGCGGCGGCGGGAGGTTCTCAAGGTTCCGGTGGTGGTGGTGTGGCGAATAATCCTTTTCCAGATCCTTCTTCTGGACTTCCGTTTTTCAATTTGCCGCTGAATCATATGCAGAATGTTCAGTTACCAGTGGATGGTTGGGCGGGAAACTCAGCTCCACGTCCACCTTTTTGA 858 0.5746 MAGLDLGSASRFVQNLHRPDLHLQQHVHDSEENQQELNRGGAGPFSSEDDDRSQGLELASAAGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDVFECVTTYARRRQRGICVLSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEQQVQMQAAAGGSQGSGGGGVANNPFPDPSSGLPFFNLPLNHMQNVQLPVDGWAGNSAPRPPF. 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02063 285 MobiDBLite consensus disorder prediction 224 250 - -
Seca11g02063 285 MobiDBLite consensus disorder prediction 228 242 - -
Seca11g02063 285 PIRSF ESCAROLA 8 285 IPR014476 GO:0003680
Seca11g02063 285 Gene3D - 97 232 - -
Seca11g02063 285 SUPERFAMILY AF0104/ALDC/Ptd012-like 94 226 - -
Seca11g02063 285 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 211 IPR005175 -
Seca11g02063 285 MobiDBLite consensus disorder prediction 27 88 - -
Seca11g02063 285 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 32 238 IPR014476 GO:0003680
Seca11g02063 285 ProSiteProfiles PPC domain profile profile. 94 230 IPR005175 -
Seca11g02063 285 CDD DUF296 98 181 IPR005175 -
Seca11g02063 285 FunFam AT-hook motif nuclear-localized protein 97 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02063 Seca-Chr11 27231301 27232158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02063 1 285 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 68.404 8.15e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02063 - - pvu:PHAVU_003G230600g 389.037