Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02056 ATGGATTCCCGGGCAGCGCCGCCTACCATGATGCCGGGACCCACCTCGTACCCTCCGAACAACTCCTCCCCAATGATCAGCCCTAATTCCGCCACCAATATCATGGCCCCCGCCACCGCCCGATTCCCCTTCGGCTCCTCCGCCGCCGCTCCACCTCCGCAGCCGCCTCCTCTGTCGGAGCCCTTCACCGCCACCTACGACGGACACCCAACGTCGCCCACCGGCGGCCTCGCCAAGAAGAAGAGGGGCCGTCCCAGGAAGTACTCGCCTGACGGTAACATTGCCCTCGGCCTCGCCCCAACTCATGTGTCACCTTCTCCCGTTGCCGGCGCTGCCGGTGATTCGGGCGCCACCTCCGCCGAAGCTCAGGCGAAGAAGCATAGGGGAAGGCCTCCGGGTTCTGGGAAGAAGCAGTTGGATGCTCTTGGAGCCGGTGGGGTTGGGTTCACTCCACATGTAATCTTGGTGGACTCTGGCGAGGACATTACTGCAAAACTTATGGCCTTTTCTCAGCAAGGGCCACGGACAGTTTGTATTCTTTCTGCCAATGGTGCAATCTGCAATGTCACCCTCCGACAGCCAGGATCAGCTGGTGGTACCGCAACGTTCGAGGGGAGATTTGAGATTATATCTTTATCAGGTGCTTTGCAGCTATCTGAAAATAATGGTGAACGTAGCAGAACAGGCAGTTTGAGTGTTTCCATTGCAGGGTCTGATGGACGAGTTTTGGGTGGTGGAGTTGCCGGAATGCTAACTGCAGCATCACCTGTACAGATCATTGTGGGTAGCTTTATTGCGGATGGGAAAAAGTCAAGCTCGAATGTCCTGAAATCTGGGCCTTCTTCAGCACCACCAACCTCCCAAATGTTAACCTTTGGTGCACCTATGACTCCAACTAGTCCTACATCTCAAGGGCCTTCAACTGAGTCCTCGGAGGACAATGATCACAGTCCTTTTAGTAGGGGACCTGGACTCTACAACAATGCTAGTCAGCCTGTTCATAATATGCAGATGTACCATCATCCACTATGGGCTGGCCAAACTCATCAGTGA 1053 0.5537 MDSRAAPPTMMPGPTSYPPNNSSPMISPNSATNIMAPATARFPFGSSAAAPPPQPPPLSEPFTATYDGHPTSPTGGLAKKKRGRPRKYSPDGNIALGLAPTHVSPSPVAGAAGDSGATSAEAQAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVDSGEDITAKLMAFSQQGPRTVCILSANGAICNVTLRQPGSAGGTATFEGRFEIISLSGALQLSENNGERSRTGSLSVSIAGSDGRVLGGGVAGMLTAASPVQIIVGSFIADGKKSSSNVLKSGPSSAPPTSQMLTFGAPMTPTSPTSQGPSTESSEDNDHSPFSRGPGLYNNASQPVHNMQMYHHPLWAGQTHQ. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02056 350 Gene3D - 151 276 - -
Seca11g02056 350 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 322 IPR039605 GO:0003680
Seca11g02056 350 SMART AT_hook_2 79 91 IPR017956 GO:0003677
Seca11g02056 350 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Seca11g02056 350 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Seca11g02056 350 MobiDBLite consensus disorder prediction 271 331 - -
Seca11g02056 350 ProSiteProfiles PPC domain profile profile. 145 285 IPR005175 -
Seca11g02056 350 MobiDBLite consensus disorder prediction 271 313 - -
Seca11g02056 350 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 265 - -
Seca11g02056 350 CDD DUF296 150 264 IPR005175 -
Seca11g02056 350 MobiDBLite consensus disorder prediction 22 36 - -
Seca11g02056 350 MobiDBLite consensus disorder prediction 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02056 Seca-Chr11 26799260 26804111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02056 78 328 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 53.282 7.14e-76 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02056 - - gmx:100789717 464.922