Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02053 ATGCCAGTTCCACTTGCTCCCTACCCGACACCACCTGCTCCTGCTCCATATACACCACCAACAAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTCTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGCTGCCATACTCTACTCATGTACATCCGTGGAGCAACAAGTGTGCAATGCTCTTGTTGTCACACTGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTCCTTATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACCTCAGTTGGGGTCAGTATAATCTCCTCTTCCTTACTATGTATGTAG 441 0.4807 MPVPLAPYPTPPAPAPYTPPTNGAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGVSIISSSLLCM. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02053 146 PANTHER PROTEIN LSD1 16 57 IPR040319 -
Seca11g02053 146 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
Seca11g02053 146 Pfam LSD1 zinc finger 69 93 IPR005735 -
Seca11g02053 146 Pfam LSD1 zinc finger 30 54 IPR005735 -
Seca11g02053 146 Pfam LSD1 zinc finger 107 131 IPR005735 -
Seca11g02053 146 NCBIfam zinc finger domain, LSD1 subclass 104 134 IPR005735 -
Seca11g02053 146 NCBIfam zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Seca11g02053 146 NCBIfam zinc finger domain, LSD1 subclass 66 95 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02053 Seca-Chr11 26711927 26714400 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Seca11g02053 zf-LSD1 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02053 - - qsu:112000975 248.054