Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca11g02049 | ATGGGTTGCACCATGAGAGAAAAGCATATCAGAGCTAATCGGAGGCCTCGATCATCGGCAAAACCCGATTCCGATTCCGATTCGTGTGACAAGGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAACCCTTCAAATACAACCTGGGTCTCACCGATTCTTCTTCTCAGAACCCTAATCCCAACCCAAACCCCAACCCTAATAATGAGGAAACCGGATGGGGATATTGCACGGAGGAACAATTAGAAGAGATCTTGTTGAAAAACTTGGAATTCGTATACAATGAAGCTGTCTCAAAGCTTGTTGCTTTGGGCTATGATGAGGATGTTGCTGTCAAAGCCATGTTGCGGAATGGTCATTGTTATGGTGGAATGGATGTGCTGACAAACATCTTGCATAACTCCCTAGCGTTCTTGAATAGCAATTGTGGTGGTGGTGGTGGTGGAAATAATGGGGATTTGGATGAGGCTGAACCTGTGTTCTCTGACTTGAGGCAGTTGGAGGAGTATTCTTTGGCGGGTATGGTGTGTTTGTTGCAACAGGTGAGGCCTCATTTGAGTAAAGGTGATGCAATGTGGTGTCTGCTCATGAGTGATCTTCATGTGGGAAGGGCTAGTACAATGGAAATTCCTGTGCCTGGAGGTGGGTGCCCTGCTCCTGCTACTGTTGAGGCTGGTGGCAATTCGGTTGGTGTTATGGCTCCAGCTCTGTGCAGGTTTCATGGGGGTTGGGGATTTGGAAATGGGGGAGGCTTGGATTTTCCAGTGAATGGAATATTTTCTTGTGGTGCAGAGATGAATTTGCAGTTGCAAAGAGATATTGAATTCCCAAAGAGGTTTAATCTTTCTCCATCAATGAAGTCCTTATTGAAAAGAAATGTTGCTATGTTTGCTGCTGGTTTTAGGGCAAATTCCAAACAATCACAGACACAGGCAAAGGCCTCTCCTGGCCGTAGCACCGGGTCTACTTTGGATTCTTCGGCTGTAGCTGGGGCAGAAGTTCCAGCTGATCAGTCTGGGGATTCTCAGAATGCTGATAACCAAGATGCTGTGAACTCAGTGCTGAGTAAATTTCGTGATTTAAATCTTGATGAGAATTTGGAGCTTGTGGCAGAAGATCAGAAGGATGAGGTGATAGTAACTTTATTTCATCAGATTAAGGATCTCGAAAAACAGGTCAAGGATAGAAAAGATTGGGCTCATCTGAAGGCAATGCAAGCAGCAAGAAAGCTAAGCAGTGATCTGACTGAGCTCAAAATGTTACGGATGGAAAGAGAAGAGACTCAAAAATTAAAGAAAGGGAAACAGGCACTTGAGGATACAACCATGAAGAGGCTCTCAGAGATGGAGAATGCTTTGAGAAAGGCCAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTGAGAAGACTAGAGACAGAGAATGCAGAAATCAAGGCAGAGATGGAGGCTTCCAAACTAAGTGCATCAGAGTCAGTCACAGCTTGCTTGGAAGTGGCGAAAAGGGAGAAAAAATACCTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTACAGAAGGAGATTTCTGATGAAAAAGAGAAGATATCGGAGACACAAGAAGTATTGGCTCAGATTAGACAGTGTCAAAAAGAAGCTGAGGTTAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTTGCTCTAGTTGAGGAGGAACGCCGAGCTAAGGAAGCAGCTGAGTCTAATAATAAGAGGAAGCTTGAGGCTCTGCGGCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTGCTAAGACTTGAGCAGGAGCTTTCACGCCTTAAAGCATCTGTTCAGTCTGCTGAGTTGCATCACCAATCAAATACTTCACCTATAAGTGATTCTGAGGGAGGCAAGCCCCAAAGAGAGACCATTGCTAAGCTGCTTCAAGAATTAGATAATCTGGAGGATTTTTCAGAGAAAGAAGTGAATGGCAACAGAGAGTGCATTATATGTATGAAAGATGAAGTCTCTGTTGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAAAAAGGGTAAGGCTGCTTGTCCTTGCTGCCGGGTTCAAATCCAGCAGAGAATCCGTGTATTTGGAGCAAGTTCTTAG | 2166 | 0.4478 | MGCTMREKHIRANRRPRSSAKPDSDSDSCDKDAISKSIAESGLKPFKYNLGLTDSSSQNPNPNPNPNPNNEETGWGYCTEEQLEEILLKNLEFVYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDVLTNILHNSLAFLNSNCGGGGGGNNGDLDEAEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASTMEIPVPGGGCPAPATVEAGGNSVGVMAPALCRFHGGWGFGNGGGLDFPVNGIFSCGAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQSQTQAKASPGRSTGSTLDSSAVAGAEVPADQSGDSQNADNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVKDRKDWAHLKAMQAARKLSSDLTELKMLRMEREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKYLKKLLAWEKQKAKLQKEISDEKEKISETQEVLAQIRQCQKEAEVKWKEELKAKEEAFALVEEERRAKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASVQSAELHHQSNTSPISDSEGGKPQRETIAKLLQELDNLEDFSEKEVNGNRECIICMKDEVSVVFLPCAHQVMCASCSDEYGKKGKAACPCCRVQIQQRIRVFGASS. | 722 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca11g02049 | 721 | SUPERFAMILY | RING/U-box | 647 | 713 | - | - | |
| Seca11g02049 | 721 | Coils | Coil | 595 | 622 | - | - | |
| Seca11g02049 | 721 | Coils | Coil | 556 | 586 | - | - | |
| Seca11g02049 | 721 | SMART | ring_2 | 667 | 706 | IPR001841 | - | |
| Seca11g02049 | 721 | MobiDBLite | consensus disorder prediction | 616 | 635 | - | - | |
| Seca11g02049 | 721 | MobiDBLite | consensus disorder prediction | 16 | 34 | - | - | |
| Seca11g02049 | 721 | CDD | RING-HC_MIP1-like | 665 | 716 | - | - | |
| Seca11g02049 | 721 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Seca11g02049 | 721 | MobiDBLite | consensus disorder prediction | 616 | 638 | - | - | |
| Seca11g02049 | 721 | Pfam | Family of unknown function (DUF6592) | 90 | 207 | IPR046527 | - | |
| Seca11g02049 | 721 | MobiDBLite | consensus disorder prediction | 306 | 348 | - | - | |
| Seca11g02049 | 721 | MobiDBLite | consensus disorder prediction | 306 | 328 | - | - | |
| Seca11g02049 | 721 | ProSiteProfiles | Zinc finger RING-type profile. | 667 | 707 | IPR001841 | - | |
| Seca11g02049 | 721 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 652 | 718 | IPR013083 | - | |
| Seca11g02049 | 721 | Coils | Coil | 447 | 488 | - | - | |
| Seca11g02049 | 721 | Coils | Coil | 503 | 537 | - | - | |
| Seca11g02049 | 721 | PANTHER | OS05G0141500 PROTEIN | 1 | 716 | IPR046934 | - | |
| Seca11g02049 | 721 | Pfam | Zinc finger, C3HC4 type (RING finger) | 664 | 712 | - | - | |
| Seca11g02049 | 721 | MobiDBLite | consensus disorder prediction | 47 | 75 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca11g02049 | Seca-Chr11 | 26614340 | 26619937 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca11g02049 | 647 | 717 | C3H Transcription Factor Family | AT1G73950 | 38.667 | 1.50e-08 | 55.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca11g02049 | - | - | gmx:100777787 | 1139.02 |