Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02046 ATGGGAGGGGCATCACTACCACCAGGCTTTCGTTTCCACCCAACTGATGAAGAACTAGTGGGATACTACCTTAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGAAGTTATCCCTGTGATTGATTTTTACAAATTCGATCCATGGGAGTTGCCCGAGAAGTCATTCCTGCCAAAACGAGATTTAGAATGGTTTTTCTTTTGTCCAAGGGATCGCAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGATATTGGAAAGCCACTGGAAAAGATAGAAAGGTTGTGTGTCAGTGTACTCCATCTACTGTCACAGCATACCGCAAGACACTGGTTTTCTATCTTGGAAGGGCCCCTTTAGGGGATAGAACTGATTGGATCATGCATGAGTATCGCCTCTGTGATGATGATCTTGGCCAAGGTTCACCATGTTTTCAGGGGGGTTTTGCTTTGTGCCGGGTTATCAAAAAGAATGAGAAGGGGCGTGATTGGCAGGGAGAACACAAAGGAATGAGGGTTGAAAGAGGTTTGATCAATAAGAATGACACCTCAATGAGAATCTCTAGTGATCCCTTGAGCATCTCTGGTGGTGATGTTTCCTCTCAAGCAAGTCACCTGAATAATGAGAGTCATTATTCAAGTCCTATTGCTTCTCCAAACAATGTGACTCCAATGGAAGAGTTTAACCAAGCTTCCACAGAAACCAATCCTTCAGACTTTTGGATCTCCCCTGATATGATTCTTGATTCTTCAAAGGACTATACTCAAGTACAAGATGCTGTGTCTGAATATTCTCCTAAGCATGACTTACCAAATACAATGACATCATGGCAATCATTGGATCATACAGAGATTTCATCTGGTTTATTATGTTACTCAAATTTTAATGGAGAAATTGAATTTTCTGATAATCTCAGTCAAATTGGCTGCATGTCACCTTACTCAAGCCAAGGGAATTTCATGGATTTCTATGGAAATTGGAATGTTCCTTATGAAGGTTATGATCAAATCAATTCAATCTCATACCCAGAGCCTTTCTAA 1050 0.4076 MGGASLPPGFRFHPTDEELVGYYLKRKVEGLEIELEVIPVIDFYKFDPWELPEKSFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKVVCQCTPSTVTAYRKTLVFYLGRAPLGDRTDWIMHEYRLCDDDLGQGSPCFQGGFALCRVIKKNEKGRDWQGEHKGMRVERGLINKNDTSMRISSDPLSISGGDVSSQASHLNNESHYSSPIASPNNVTPMEEFNQASTETNPSDFWISPDMILDSSKDYTQVQDAVSEYSPKHDLPNTMTSWQSLDHTEISSGLLCYSNFNGEIEFSDNLSQIGCMSPYSSQGNFMDFYGNWNVPYEGYDQINSISYPEPF. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02046 349 Gene3D NAC domain 15 165 IPR036093 GO:0003677|GO:0006355
Seca11g02046 349 MobiDBLite consensus disorder prediction 197 222 - -
Seca11g02046 349 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
Seca11g02046 349 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Seca11g02046 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 235 - -
Seca11g02046 349 FunFam Nac domain-containing protein 86 15 163 - -
Seca11g02046 349 Pfam No apical meristem (NAM) protein 7 136 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02046 Seca-Chr11 26584937 26587769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02046 1 303 NAC Transcription Factor Family AT4G17980 54.545 1.08e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g02046 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02046 - - gmx:100792714 571.237