Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02041 ATGGGTTGTTTACACTCCAAAACCGCTCATCTTCACTCTCCTGAAGACCCTCCCACTGCATTACCCGACTCCAAGAAACCCGATCCAGGTGATGGTGGGGATGATGTTGATCAAGAGTGTCAGGTTCCAGCATTCAAAGAGTATGGACTGAATGAACTGCGAAGGGCCACAAATGAGTTCAGCACAGATTACATTGTCTCTGAGAGTGGTGAGAAAGCTCCCAATGTGGTCTACAGAGGAAAGCTGGAGAACAATCGGTTAGTTGCTGTCAAGCGGTTCTCCAAATTGTCATGGCCTGATGCTCAACAGTTTATGGTGAGAGGAATAAACTACATGGAATTCAAGTTTTTGTTCATGGTTTTGATTGGTCAGGCAGAGGCAGCTGGAGTTGGGAAAGTGAGGCACAAGAGACTGGTGAATCTAATTGGTTGTTGTGCTGAAGGAGATGAAAGGCTCTTGGTAGCTGAGTACATGCCAAATGATACTTTGTCCAAGCATCTCTTTCATTGGGACAAGCAACCATTACCATGGGAAATGCGTGTTAGAGTTGCATACCATGTTGCCCAGGCACTAGATCATTGTAGCATGGAAAACCGGAAAATATATCATGATCTGAATGCATATAGAATTCTTTTTGATGAGGATGGTGATCCCCGTCTATCAAGTTTTGGGCTTATGAAAAATAGTCGAGATGGGAAAAGCTACAGTACTAATTTAGCTTATACTCCACCTGAATTTTTGCGAACAGGCAGGATAATCCCAGAGAGTGTGATCTACAGTTATGGAACTGTTCTTCTGGATCTTTTGAGTGGCAAGCATATTCCTCCAAGCCATGCTTTGGACCTAATTAGAGGGAAAAATGCATTGTTGTTGATGGATTCGTCCCTAGAAGGGCAATATGCAAATGATGATGCTACAAAGTTGGTTGAGCTTGCTTCAAAATGTCTTCAGTTTGAGGCCAGAGAACGACCTGATATTAAGTTTCTTCTTACTGCAGTTGCACCTCTTCAAAAGCAGAAAGAGGTAGCATCTCATGTGTTAATGGGCCTTACTAAAACCACGGCAGTGCTACCAACCATGCTTTCTCCTCTGGGAAAGGCTTGTGCAAGGATGGATCTTACTGCTGTGCATGATATATTGTTAAAAACAGGTTATAAAGATGAAGAAGGTGCAGAAAATGAGTTTTCATTTCAAGAGTGGACACAACAAGTACAAGACATCTTGAACACAAAAAAGTTTGGGGATATTGCATTTAGAGATAAGGATTTCAAAAATGCAATTGAATATTATTCTAAGTTGGTGGTTATGATGTCTGTTCCTTCTGCTACTGTCTTTGCAAGGAGAGCCTTCTCCTACTTGATGAATGATCAGGCAGAGCTTGCATTAAGGGATGCCATGCAGGCACAGGTATGCATACCTGATTGGCCAACTGCATTCTACCTGCAAGCTCTTGCTCTCTCAAAGCTGGGAATGGAAACTGATGCACAGGACATGCTTAATGATGGGGCAGCCTTTGAAGCAAAGAGATCTAACAGCTGGCGTTGTTAA 1548 0.4283 MGCLHSKTAHLHSPEDPPTALPDSKKPDPGDGGDDVDQECQVPAFKEYGLNELRRATNEFSTDYIVSESGEKAPNVVYRGKLENNRLVAVKRFSKLSWPDAQQFMVRGINYMEFKFLFMVLIGQAEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWEMRVRVAYHVAQALDHCSMENRKIYHDLNAYRILFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRIIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNALLLMDSSLEGQYANDDATKLVELASKCLQFEARERPDIKFLLTAVAPLQKQKEVASHVLMGLTKTTAVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENEFSFQEWTQQVQDILNTKKFGDIAFRDKDFKNAIEYYSKLVVMMSVPSATVFARRAFSYLMNDQAELALRDAMQAQVCIPDWPTAFYLQALALSKLGMETDAQDMLNDGAAFEAKRSNSWRC. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02041 515 Gene3D Transferase(Phosphotransferase) domain 1 159 351 - -
Seca11g02041 515 MobiDBLite consensus disorder prediction 19 33 - -
Seca11g02041 515 MobiDBLite consensus disorder prediction 1 38 - -
Seca11g02041 515 FunFam probable serine/threonine-protein kinase At5g41260 159 350 - -
Seca11g02041 515 SUPERFAMILY Protein kinase-like (PK-like) 50 333 IPR011009 -
Seca11g02041 515 ProSiteProfiles Protein kinase domain profile. 63 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02041 515 SUPERFAMILY TPR-like 406 504 IPR011990 GO:0005515
Seca11g02041 515 Gene3D Tetratricopeptide repeat domain 405 513 IPR011990 GO:0005515
Seca11g02041 515 Gene3D Phosphorylase Kinase; domain 1 35 157 - -
Seca11g02041 515 FunFam probable serine/threonine-protein kinase At4g35230 405 514 - -
Seca11g02041 515 Pfam Protein kinase domain 78 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g02041 515 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 35 510 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02041 Seca-Chr11 26428590 26435119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02041 14 334 Glycoside Hydrolase AT3G07070 32.174 7.83e-38 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Seca11g02041 Pkinase 9.7e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02041 K14500 - gmx:100793576 954.51