Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g02032 ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCAAAGGGACTCAAGGTTCTTCTCCTTGAGGGAGACAGCACTTCTGCTGCCGAGATAAAAGCAAAGCTTGAATCCATGGACTATAATGTTTCTATATTCTGCAATGAGAATGAGGCCTTGTCAGCAATCTCAAGTAGACCTGAAGGCTTCCACATTGCCATAGTGGAGGTGAGCTCAAGCAATTCCCAGGGAGGTTTCAAATTTCTTGAAAATGCTAAGGATTTGCCAACCATTATGACTTCAAACAATCATTGCCTGAACACCATGATGAAGTGCATAGCGCTTGGTGCCGTTGAGTTCCTCAGCAAACCACTCTCTGAGGACAAGCTCAGAAATATCTGGCAGCATGTTGTTCACAAGGCATTCAATGCTGGGGCAAGTTCCCAGTCTGAATCACTAAAACCTGTCAAAGAATCTGTGGTGTCCATGTTGCAGCTCCAAACAGACAACATGCAACATGAAAATGAAATCTCAAATGATGTAGAGAAAGTATCCGGGTTTACTGACAATGACCATGAGCAGTATCCAGCTCCTTCAACCCCACAATTGAAACAAGGGGCAAGATTACTCCATGATGGGGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGTGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTCCTCAGCAGAGGAAATCTGAATCTGAAATGACTCTGGTTAAGGTGGAAGAGGATTTTGGAGATGCTTCTAAGGGTGAGAGTGCAGTTTCTCAGCATCCACAAAATAAAAAGGTTCTCAGCAACACTGACAGTAACACAGCATGTCCAAATAAAGTGCGTATCCATAGTGATAAATGTGAGATAAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACATCTGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAACAACTAGGCATAGATCAAGCCATTCCTTCTCGAATATTGGAGCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTAGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACAAATCTTGCCCAAGGAAGATGATCGAAAATGGCTAAATCAAAGAGATCCAATGCACAGGAGCTATTGTCATCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCACACCCTTCCTCCACCTCCTGTATATCCTGTGTGGGGACAATCTGGCGGCCAAATGGCTGGCATGCAGATTTGGAGCCCTCCTGGTTATCCCTTGTGGCAGCCTGCAGAAAGTTGGCAATGGAAACCATATCCCGGGATGCATGCAGATGCATGGGGCTGCCCTGTGTTACCACCTCCTCAAGCTCCTTGCTTTCCCTACTCTCAGAATGTACCTGCGTTACATGATGCTAATGCAATGGATTACACATTTAGCATGCCACATAGTTCCTTTGAGCAGTATCCGGCAGAGGAGATTGTTGACAAGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCCTTACCCTTGGGCCTAAAACCTCCTTCCACAGATAGTGTGTTGGCTGAGCTTTCCAGGCAAGGAATTTCCAGCATCCCTCCTAGCAGCTATTCTAATCTGAGTTGA 1662 0.441 MVCTANDLQEWKDFPKGLKVLLLEGDSTSAAEIKAKLESMDYNVSIFCNENEALSAISSRPEGFHIAIVEVSSSNSQGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGASSQSESLKPVKESVVSMLQLQTDNMQHENEISNDVEKVSGFTDNDHEQYPAPSTPQLKQGARLLHDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLNAETESTPQQRKSESEMTLVKVEEDFGDASKGESAVSQHPQNKKVLSNTDSNTACPNKVRIHSDKCEIKANRKKMKVDWTSELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQILPKEDDRKWLNQRDPMHRSYCHQRPIMAFPPYHSNHTLPPPPVYPVWGQSGGQMAGMQIWSPPGYPLWQPAESWQWKPYPGMHADAWGCPVLPPPQAPCFPYSQNVPALHDANAMDYTFSMPHSSFEQYPAEEIVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISSIPPSSYSNLS. 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g02032 553 NCBIfam myb-like DNA-binding domain, SHAQKYF class 312 367 IPR006447 GO:0003677
Seca11g02032 553 Gene3D - 308 370 - -
Seca11g02032 553 MobiDBLite consensus disorder prediction 231 253 - -
Seca11g02032 553 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 309 368 IPR017930 -
Seca11g02032 553 SUPERFAMILY CheY-like 16 134 IPR011006 -
Seca11g02032 553 MobiDBLite consensus disorder prediction 212 255 - -
Seca11g02032 553 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Seca11g02032 553 Pfam Response regulator receiver domain 20 127 IPR001789 GO:0000160
Seca11g02032 553 SUPERFAMILY Homeodomain-like 311 369 IPR009057 -
Seca11g02032 553 Gene3D - 18 148 - -
Seca11g02032 553 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 547 IPR044825 GO:0003700|GO:0045893
Seca11g02032 553 MobiDBLite consensus disorder prediction 272 289 - -
Seca11g02032 553 FunFam Two-component response regulator 308 371 - -
Seca11g02032 553 MobiDBLite consensus disorder prediction 269 289 - -
Seca11g02032 553 FunFam Two-component response regulator-like APRR2 17 143 - -
Seca11g02032 553 SMART REC_2 18 128 IPR001789 GO:0000160
Seca11g02032 553 Pfam Myb-like DNA-binding domain 315 364 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g02032 Seca-Chr11 26168692 26175411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g02032 1 548 Response Regulator Gene Family AT4G18020 50.859 6.26e-150 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca11g02032 Response_reg 2.4e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g02032 - - gmx:100777535 872.848